Brachyistius frenatus (kelp perch): 138630460
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Entry
138630460 CDS
T10614
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre04510
Focal adhesion
bfre04512
ECM-receptor interaction
bfre04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
bfre04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138630460 (col4a6)
Glycosaminoglycan binding proteins [BR:
bfre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138630460 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138630460
NCBI-ProteinID:
XP_069570926
LinkDB
All DBs
Position
Unknown
AA seq
1692 aa
AA seq
DB search
MKFLIWVIAVGLAVSSAHGGGKFDEPCGGLDCSGGCRCNPEKGGRGRPGSLGEVGQGGAE
GQRGTLGPSGPKGEKGHVGLKGPSGPKGDKGPMGVPGFQGNDGVPGHPGQEGGRGPPGLD
GCNGTRGEPGSPGFGTGGPGYPGPAGPLGLKGPKGEPRFISDNNIVGLPGLPGRDGPPGA
TGPDGPPGFPGPFGPDGYPGPPGPPGPPGLKGSQSDRYQGEKGDKGDVGLPGDPGQPMIN
GVVEFVGFPKGDKGIQGETGPKGFRGFPGRPGQPGPFGYRGEFGEKGIPGYPGARGPPGF
NGPPGTAGQQGFRGNTGYPGQPGYTGPKGDQGIPGPPGPPVYSSGSTTAVQGAPGDSGLS
GFPGVPGVPGDLGPPGLPGQPGFGGYGPGRPGSPGLPGIQGPRGEKGIPGSSLYGTEGPA
GLPGLPGPPGPQGSIRNPIQPCFDPDRPTGSPGQPGPPGPRGEPGGMGNKGFRGDTGHCA
CLGGPPGFPGLPGPPGLNGSPGFPGRKGEPGDFGSAGLNGVPGAAGRTGERGVFGRKGEK
GVSYFPDLGPGVKGELGATGPRGPTGETGKSGRGGLPGFPGAPGPPGDGGFGTVGEKGFP
GFPGSKGRPGGPGEPGIGYVGTPGFRGEDGEPGIPGLPGQPGFPGPSGENSCGGVIDAGE
GTGELLPCVIPGEDGNPGVPGVPGRPGPKGQPGFSGGSGRPGFDGTKGERGDPGFGGQPG
PQGFPGPRGDPGGPGTPGQSFDGGRGKDGVLGRPGAKGQPGEVLGATPGAPGQNGFPGTP
GDKGQTGTPGGSGSPGFDGRGGVPGLKGECGVNGFPGNPGAPGPPGEITGGTGGRPGAPG
SKGLSGPPGYPGRKGDRGDPGFPGPSGMKGNPGLPGTPGSLGQRGTPGPPGPGTREGIPG
RPGIKGERGFPGLMGFPGLPGRPGSPGFPGGKGLPGGPGRDGYFGGPGYPGQKGEKGNPG
PPGLLAPRDAEKGDPGTPGGSGLSGFPGPRGDKGVPGVPGRQGLPGLPGYAEQSKGQPGQ
PGFPGTPGGPGYPGPKGEAGIMGFPGMSGPRGDDGTPGFPGNPGEPGRPGGKGPPGESYG
YPGRAGAKGQPGDPGFPGGRSIDGAPGDNGFPGGPGYPGVKGGPGEAGRPGIMGSPGFPG
PKGQPGYPGRRAQDGTPGGPGGPGGPGANGLSGSPGLDGLNGLGGPKGLPGTPGGTVGGR
PGAPGIPGLKGERGVSYPGASGFPGQKGPRGEPGGPGLAGFPGRPGPLGPTVGSDIPGPP
GDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDPGLPGFPGSPGRKGEPGFSGGPGIP
GSAGFKGGRGETGFSGSPGAKGYPGDPGYSGNQGPKGLQGPPGRKGSPGPIVVVDYRPPF
GDEGYPGGSGSSGIPGEPGQPGRPGFPGRKGGPGPLGKLGRPGFPGLAGPVGDPGPPGFP
GPTGEQGVPGAVGLPGSPGIVRRSYSIGYTLVKHSQSSQVPMCPQGMAKLWEGYSLLYVE
GQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNDVCYYASRNDKSYWLSTTAPIPMMPVAEE
QIRSYISRCSVCEAPSYAVAVHSQDMTIPTCPPGWRSLWIGYSFLMHTAAGAEGGGQSLV
SPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVDAGQEFIYSPSQETLKGGQERS
RVSRCQVCSKIL
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatttgggtgatagcagtcggcttggcggtgagctctgcgcacggaggt
ggcaagtttgatgagccatgcggcggcctggactgcagcggagggtgcaggtgcaacccg
gagaaaggcggcaggggtcgtccggggtctctcggtgaagtcggtcagggcggagcggag
gggcagcgtgggactctggggccttcagggcccaaaggagagaagggccacgtcggactg
aagggaccatctgggcccaaaggagacaaaggaccaatgggagtgccaggatttcaagga
aacgacggagtacctggtcatcccggtcaggagggcggcagaggaccgccagggctggac
ggctgtaacgggaccagaggagaacccgggtcgcccggctttgggacgggaggacctgga
taccctggacctgctggaccactggggctaaaaggtccgaaaggagagcctcggttcatc
tctgacaacaacatcgtgggtcttcctggtttaccaggacgcgatggtcctcctggtgcc
acaggtcctgacggtccacctggtttcccgggtccattcgggcccgacggatacccgggc
ccaccgggtccccccgggcccccggggctgaaggggagccaaagtgaccgatatcaagga
gagaaaggagacaagggcgacgtgggcttgcccggcgaccccggccagccaatgatcaat
ggcgtggtggagtttgtgggttttcccaaaggagacaaaggaattcagggtgaaactggt
ccgaagggtttcagagggttccctggaaggcccggtcaacctggaccttttggctatcgt
ggtgaatttggagagaaggggatccccgggtaccccggagcaagaggtcctccaggtttt
aacggacctcccggcactgcaggacaacagggattcagaggaaatacaggctaccccgga
caaccaggatacacaggacccaagggagaccagggaatccccggacctccaggaccgccg
gtgtacagcagtggttcaaccactgctgttcaaggagctccaggtgactcaggtctcagc
ggcttccctggtgtccccggtgtcccgggagacctaggacccccgggacttccaggtcaa
ccgggttttggcggttatggtccaggtcgtcccggatccccaggtcttcctgggatccaa
ggcccgagaggagagaagggtatcccgggcagctcactctacggcaccgaaggtcccgcc
ggactccccggactccccggaccccccggacctcagggctccatcagaaatcccattcaa
ccctgcttcgaccctgacaggcccacaggttcccccggacagccggggcctccgggcccc
agaggagagccgggggggatgggaaacaaaggcttcagaggtgacactggtcactgtgct
tgtctcggaggccccccggggtttcctggactacctggacctcccggactcaacggcagc
cccggcttccccggacgaaagggtgagcccggtgacttcggttccgccggcttgaatggt
gtaccaggagctgctggccgcactggtgagaggggtgtcttcggtcgtaagggggagaag
ggggtttcgtacttccccgacctgggaccgggagtgaaaggagagctgggagctactgga
ccacgaggacctacaggtgaaacaggaaaatctggcagaggcggactgcctggtttcccc
ggagcccccggacctccaggcgacggtggctttgggacagtcggagagaaaggtttccca
gggttcccggggtctaagggtcgtcctggcggccccggcgagcccggcattggctacgtc
ggaacacccggctttcgtggagaggacggcgagcctggtatacctgggttaccagggcaa
cccggttttcctggaccaagtggtgaaaacagctgtggaggggttattgacgccggagag
ggaacgggcgaattgctgccttgcgtcatacctggtgaggacggaaaccccggcgtgccc
ggtgtacccggacgaccaggccctaaaggtcagccaggtttctcaggaggttcgggacgt
ccagggttcgatggcaccaaaggagagagaggagaccccggcttcggagggcagcctgga
ccacaaggtttccccggacccagaggagaccccggaggtcctggtacccccgggcagagc
tttgacggaggcagggggaaggatggcgttctggggcgtcccggagccaaaggccagccg
ggcgaggtcctcggggccacacccggagctccgggacagaacggctttcctgggacccct
ggagacaagggccagaccgggacccccgggggatctggatcacctggtttcgacggacgt
ggcggcgttcccggactgaagggagagtgtggcgtcaacggttttcccggtaatcccggc
gctcccggacctccaggtgagatcaccggcggcaccggcggtcggcccggagctcccggc
agcaaaggactgagcggaccaccaggttaccctggtcggaaaggagaccgaggagatccc
ggtttccccggaccctctggaatgaaaggaaacccgggactgcctggcactcccgggtcg
ctgggacagaggggaacgcctggacctccaggaccaggaacgagagagggaatcccagga
aggccaggaataaagggtgaacgaggtttcccaggacttatgggtttccccggactacca
ggtcgacctggttctccaggatttcctggagggaaaggattacctggagggccaggtaga
gatggatattttggaggacccggataccccggacagaaaggtgagaaaggaaaccccggt
cctccaggtctgcttgctccccgagatgcggaaaaaggagacccaggaacccccggaggt
agcggcctttctgggttcccaggaccccgaggtgacaagggtgtgccaggtgtgcctggt
cgtcagggtctgcctggacttcctggttacgctgagcagagtaaaggacagcccggacag
cccgggtttcccgggacaccaggaggtccgggctaccccggaccaaagggagaagcggga
atcatgggcttccccggcatgtcaggaccaaggggtgatgatggcacacctggtttccca
ggcaacccgggagaacccggtcgccccggtggcaaaggtccgcccggagaaagttacggt
tatcctggaagggcgggagctaaaggccagccaggagacccggggttcccaggcggtcgt
agcattgatggcgcccccggcgacaatggatttccaggaggtccaggttaccccggagtg
aaggggggtcctggtgaagcgggacgtcctggaataatgggttcccctggtttccccggg
ccgaagggtcagccgggatacccgggaagaagagcacaagatgggacaccaggaggtccc
ggaggtcccggaggtcccggagccaacggtttgtctggatcccctggtttggacggacta
aacggcctcggcggacccaaaggcctccctggaaccccaggtgggactgtaggaggtcgc
ccaggtgctcccggtattccagggctgaagggagagaggggcgtctcctaccccggagcg
tcaggcttccccggacagaagggaccgagaggagaaccaggtggtcctggactcgcaggg
ttccctggtcggcccggacctctcggtccgaccgtgggatcagacattcccggacctccg
ggagaccccggcctccctggactggatggagaatatggtttccaaggtcctccaggtcct
ccagggccccccggaccaggcaccgcccagggagacagaggggaccctggactgccgggc
ttccccggctcccccggcaggaagggagagccaggattctcaggaggccctggaatcccc
ggcagtgctggtttcaaaggaggtcgaggtgaaactggcttcagcggcagtcctggtgcc
aagggttaccccggtgaccctggttactctggaaaccaaggacccaagggattacaagga
cctcccggtcggaagggtagcccaggacccatagtggtggtcgactacaggccaccgttt
ggagacgagggttatcccggtggaagcggatcctccggtatccccggagagcccggtcag
cccggcaggcccggatttccaggtaggaagggtggtcccggtcctttgggtaaacttggc
aggcctggatttcccggtctggccggacccgtcggtgatcctggacctcccggcttcccc
ggacccactggagaacaaggtgtccccggtgcggtcggtcttcccggctcgcctggcatc
gtccgccgcagctacagcatcggatacacgctggtgaagcacagccagagctcccaggtg
cccatgtgtcctcagggcatggccaaactgtgggagggatacagcctgctgtacgtggag
ggacaggagaaggcccacaaccaagacctcggtcagccgggctcgtgcctccccaggttc
agcaccatccccttcctctactgctcccccaacgacgtctgctactacgccagccgcaac
gacaagtcctactggctgtccacgaccgcgcccatccccatgatgcccgtggccgaggag
cagatacggtcctacatcagcaggtgttcggtgtgcgaggctccgtcttacgcggtggcg
gtccacagtcaggacatgaccatccccacctgcccccccggctggaggagtctctggatt
ggatactccttcctcatgcacacggcagccggcgccgagggcggcggtcagtcgctggtg
tcgcccggctcgtgcctggaggacttccgggcgactccgttcatcgagtgcaacggggct
aaaggcacctgccactacttcgccaataagtacagcttctggctgaccaccgtggatgcc
ggccaggagttcatctactcgccgtcgcaggagaccctgaagggaggccaggagcgctcc
agagtcagccgctgccaagtctgcagcaagatcttgtag
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