Brachyistius frenatus (kelp perch): 138630460
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Entry
138630460 CDS
T10614
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre04382
Cornified envelope formation
bfre04510
Focal adhesion
bfre04512
ECM-receptor interaction
bfre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138630460 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138630460 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138630460 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138630460 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfre04147
]
138630460 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
bfre00536
]
138630460 (col4a6)
Exosome [BR:
bfre04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138630460 (col4a6)
Glycosaminoglycan binding proteins [BR:
bfre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138630460 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138630460
NCBI-ProteinID:
XP_069570926
LinkDB
All DBs
Position
Unknown
AA seq
1692 aa
AA seq
DB search
MKFLIWVIAVGLAVSSAHGGGKFDEPCGGLDCSGGCRCNPEKGGRGRPGSLGEVGQGGAE
GQRGTLGPSGPKGEKGHVGLKGPSGPKGDKGPMGVPGFQGNDGVPGHPGQEGGRGPPGLD
GCNGTRGEPGSPGFGTGGPGYPGPAGPLGLKGPKGEPRFISDNNIVGLPGLPGRDGPPGA
TGPDGPPGFPGPFGPDGYPGPPGPPGPPGLKGSQSDRYQGEKGDKGDVGLPGDPGQPMIN
GVVEFVGFPKGDKGIQGETGPKGFRGFPGRPGQPGPFGYRGEFGEKGIPGYPGARGPPGF
NGPPGTAGQQGFRGNTGYPGQPGYTGPKGDQGIPGPPGPPVYSSGSTTAVQGAPGDSGLS
GFPGVPGVPGDLGPPGLPGQPGFGGYGPGRPGSPGLPGIQGPRGEKGIPGSSLYGTEGPA
GLPGLPGPPGPQGSIRNPIQPCFDPDRPTGSPGQPGPPGPRGEPGGMGNKGFRGDTGHCA
CLGGPPGFPGLPGPPGLNGSPGFPGRKGEPGDFGSAGLNGVPGAAGRTGERGVFGRKGEK
GVSYFPDLGPGVKGELGATGPRGPTGETGKSGRGGLPGFPGAPGPPGDGGFGTVGEKGFP
GFPGSKGRPGGPGEPGIGYVGTPGFRGEDGEPGIPGLPGQPGFPGPSGENSCGGVIDAGE
GTGELLPCVIPGEDGNPGVPGVPGRPGPKGQPGFSGGSGRPGFDGTKGERGDPGFGGQPG
PQGFPGPRGDPGGPGTPGQSFDGGRGKDGVLGRPGAKGQPGEVLGATPGAPGQNGFPGTP
GDKGQTGTPGGSGSPGFDGRGGVPGLKGECGVNGFPGNPGAPGPPGEITGGTGGRPGAPG
SKGLSGPPGYPGRKGDRGDPGFPGPSGMKGNPGLPGTPGSLGQRGTPGPPGPGTREGIPG
RPGIKGERGFPGLMGFPGLPGRPGSPGFPGGKGLPGGPGRDGYFGGPGYPGQKGEKGNPG
PPGLLAPRDAEKGDPGTPGGSGLSGFPGPRGDKGVPGVPGRQGLPGLPGYAEQSKGQPGQ
PGFPGTPGGPGYPGPKGEAGIMGFPGMSGPRGDDGTPGFPGNPGEPGRPGGKGPPGESYG
YPGRAGAKGQPGDPGFPGGRSIDGAPGDNGFPGGPGYPGVKGGPGEAGRPGIMGSPGFPG
PKGQPGYPGRRAQDGTPGGPGGPGGPGANGLSGSPGLDGLNGLGGPKGLPGTPGGTVGGR
PGAPGIPGLKGERGVSYPGASGFPGQKGPRGEPGGPGLAGFPGRPGPLGPTVGSDIPGPP
GDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDPGLPGFPGSPGRKGEPGFSGGPGIP
GSAGFKGGRGETGFSGSPGAKGYPGDPGYSGNQGPKGLQGPPGRKGSPGPIVVVDYRPPF
GDEGYPGGSGSSGIPGEPGQPGRPGFPGRKGGPGPLGKLGRPGFPGLAGPVGDPGPPGFP
GPTGEQGVPGAVGLPGSPGIVRRSYSIGYTLVKHSQSSQVPMCPQGMAKLWEGYSLLYVE
GQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNDVCYYASRNDKSYWLSTTAPIPMMPVAEE
QIRSYISRCSVCEAPSYAVAVHSQDMTIPTCPPGWRSLWIGYSFLMHTAAGAEGGGQSLV
SPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVDAGQEFIYSPSQETLKGGQERS
RVSRCQVCSKIL
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatttgggtgatagcagtcggcttggcggtgagctctgcgcacggaggt
ggcaagtttgatgagccatgcggcggcctggactgcagcggagggtgcaggtgcaacccg
gagaaaggcggcaggggtcgtccggggtctctcggtgaagtcggtcagggcggagcggag
gggcagcgtgggactctggggccttcagggcccaaaggagagaagggccacgtcggactg
aagggaccatctgggcccaaaggagacaaaggaccaatgggagtgccaggatttcaagga
aacgacggagtacctggtcatcccggtcaggagggcggcagaggaccgccagggctggac
ggctgtaacgggaccagaggagaacccgggtcgcccggctttgggacgggaggacctgga
taccctggacctgctggaccactggggctaaaaggtccgaaaggagagcctcggttcatc
tctgacaacaacatcgtgggtcttcctggtttaccaggacgcgatggtcctcctggtgcc
acaggtcctgacggtccacctggtttcccgggtccattcgggcccgacggatacccgggc
ccaccgggtccccccgggcccccggggctgaaggggagccaaagtgaccgatatcaagga
gagaaaggagacaagggcgacgtgggcttgcccggcgaccccggccagccaatgatcaat
ggcgtggtggagtttgtgggttttcccaaaggagacaaaggaattcagggtgaaactggt
ccgaagggtttcagagggttccctggaaggcccggtcaacctggaccttttggctatcgt
ggtgaatttggagagaaggggatccccgggtaccccggagcaagaggtcctccaggtttt
aacggacctcccggcactgcaggacaacagggattcagaggaaatacaggctaccccgga
caaccaggatacacaggacccaagggagaccagggaatccccggacctccaggaccgccg
gtgtacagcagtggttcaaccactgctgttcaaggagctccaggtgactcaggtctcagc
ggcttccctggtgtccccggtgtcccgggagacctaggacccccgggacttccaggtcaa
ccgggttttggcggttatggtccaggtcgtcccggatccccaggtcttcctgggatccaa
ggcccgagaggagagaagggtatcccgggcagctcactctacggcaccgaaggtcccgcc
ggactccccggactccccggaccccccggacctcagggctccatcagaaatcccattcaa
ccctgcttcgaccctgacaggcccacaggttcccccggacagccggggcctccgggcccc
agaggagagccgggggggatgggaaacaaaggcttcagaggtgacactggtcactgtgct
tgtctcggaggccccccggggtttcctggactacctggacctcccggactcaacggcagc
cccggcttccccggacgaaagggtgagcccggtgacttcggttccgccggcttgaatggt
gtaccaggagctgctggccgcactggtgagaggggtgtcttcggtcgtaagggggagaag
ggggtttcgtacttccccgacctgggaccgggagtgaaaggagagctgggagctactgga
ccacgaggacctacaggtgaaacaggaaaatctggcagaggcggactgcctggtttcccc
ggagcccccggacctccaggcgacggtggctttgggacagtcggagagaaaggtttccca
gggttcccggggtctaagggtcgtcctggcggccccggcgagcccggcattggctacgtc
ggaacacccggctttcgtggagaggacggcgagcctggtatacctgggttaccagggcaa
cccggttttcctggaccaagtggtgaaaacagctgtggaggggttattgacgccggagag
ggaacgggcgaattgctgccttgcgtcatacctggtgaggacggaaaccccggcgtgccc
ggtgtacccggacgaccaggccctaaaggtcagccaggtttctcaggaggttcgggacgt
ccagggttcgatggcaccaaaggagagagaggagaccccggcttcggagggcagcctgga
ccacaaggtttccccggacccagaggagaccccggaggtcctggtacccccgggcagagc
tttgacggaggcagggggaaggatggcgttctggggcgtcccggagccaaaggccagccg
ggcgaggtcctcggggccacacccggagctccgggacagaacggctttcctgggacccct
ggagacaagggccagaccgggacccccgggggatctggatcacctggtttcgacggacgt
ggcggcgttcccggactgaagggagagtgtggcgtcaacggttttcccggtaatcccggc
gctcccggacctccaggtgagatcaccggcggcaccggcggtcggcccggagctcccggc
agcaaaggactgagcggaccaccaggttaccctggtcggaaaggagaccgaggagatccc
ggtttccccggaccctctggaatgaaaggaaacccgggactgcctggcactcccgggtcg
ctgggacagaggggaacgcctggacctccaggaccaggaacgagagagggaatcccagga
aggccaggaataaagggtgaacgaggtttcccaggacttatgggtttccccggactacca
ggtcgacctggttctccaggatttcctggagggaaaggattacctggagggccaggtaga
gatggatattttggaggacccggataccccggacagaaaggtgagaaaggaaaccccggt
cctccaggtctgcttgctccccgagatgcggaaaaaggagacccaggaacccccggaggt
agcggcctttctgggttcccaggaccccgaggtgacaagggtgtgccaggtgtgcctggt
cgtcagggtctgcctggacttcctggttacgctgagcagagtaaaggacagcccggacag
cccgggtttcccgggacaccaggaggtccgggctaccccggaccaaagggagaagcggga
atcatgggcttccccggcatgtcaggaccaaggggtgatgatggcacacctggtttccca
ggcaacccgggagaacccggtcgccccggtggcaaaggtccgcccggagaaagttacggt
tatcctggaagggcgggagctaaaggccagccaggagacccggggttcccaggcggtcgt
agcattgatggcgcccccggcgacaatggatttccaggaggtccaggttaccccggagtg
aaggggggtcctggtgaagcgggacgtcctggaataatgggttcccctggtttccccggg
ccgaagggtcagccgggatacccgggaagaagagcacaagatgggacaccaggaggtccc
ggaggtcccggaggtcccggagccaacggtttgtctggatcccctggtttggacggacta
aacggcctcggcggacccaaaggcctccctggaaccccaggtgggactgtaggaggtcgc
ccaggtgctcccggtattccagggctgaagggagagaggggcgtctcctaccccggagcg
tcaggcttccccggacagaagggaccgagaggagaaccaggtggtcctggactcgcaggg
ttccctggtcggcccggacctctcggtccgaccgtgggatcagacattcccggacctccg
ggagaccccggcctccctggactggatggagaatatggtttccaaggtcctccaggtcct
ccagggccccccggaccaggcaccgcccagggagacagaggggaccctggactgccgggc
ttccccggctcccccggcaggaagggagagccaggattctcaggaggccctggaatcccc
ggcagtgctggtttcaaaggaggtcgaggtgaaactggcttcagcggcagtcctggtgcc
aagggttaccccggtgaccctggttactctggaaaccaaggacccaagggattacaagga
cctcccggtcggaagggtagcccaggacccatagtggtggtcgactacaggccaccgttt
ggagacgagggttatcccggtggaagcggatcctccggtatccccggagagcccggtcag
cccggcaggcccggatttccaggtaggaagggtggtcccggtcctttgggtaaacttggc
aggcctggatttcccggtctggccggacccgtcggtgatcctggacctcccggcttcccc
ggacccactggagaacaaggtgtccccggtgcggtcggtcttcccggctcgcctggcatc
gtccgccgcagctacagcatcggatacacgctggtgaagcacagccagagctcccaggtg
cccatgtgtcctcagggcatggccaaactgtgggagggatacagcctgctgtacgtggag
ggacaggagaaggcccacaaccaagacctcggtcagccgggctcgtgcctccccaggttc
agcaccatccccttcctctactgctcccccaacgacgtctgctactacgccagccgcaac
gacaagtcctactggctgtccacgaccgcgcccatccccatgatgcccgtggccgaggag
cagatacggtcctacatcagcaggtgttcggtgtgcgaggctccgtcttacgcggtggcg
gtccacagtcaggacatgaccatccccacctgcccccccggctggaggagtctctggatt
ggatactccttcctcatgcacacggcagccggcgccgagggcggcggtcagtcgctggtg
tcgcccggctcgtgcctggaggacttccgggcgactccgttcatcgagtgcaacggggct
aaaggcacctgccactacttcgccaataagtacagcttctggctgaccaccgtggatgcc
ggccaggagttcatctactcgccgtcgcaggagaccctgaagggaggccaggagcgctcc
agagtcagccgctgccaagtctgcagcaagatcttgtag
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integrated database retrieval system
