Brachyistius frenatus (kelp perch): 138630597
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Entry
138630597 CDS
T10614
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138630597 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfre03041
]
138630597 (dhx16)
Enzymes [BR:
bfre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138630597 (dhx16)
Spliceosome [BR:
bfre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138630597 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
PWI
nSTAND3
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
138630597
NCBI-ProteinID:
XP_069571153
LinkDB
All DBs
Position
Unknown
AA seq
1053 aa
AA seq
DB search
MAGLEQWVSDRLHDILGLSDRYVSQFMIGTARKASSAEDFVTRLEQTGTIDIDHSVSAFA
KELFEKIPRKQVAEKPSRALEREAIEMDKKNRTYTLLEDSDGDEDAVTETQKGKKKSKSK
DRGNKRKHIRQKKGSESSSEDEAPQRSNSGDQKSVMKEDEEEEEEWEKEERERLQDIEER
DAFAQRVREKDKDKTRNIGERTDKKAYEEAQKRLKMAEDDQKNMLPELRKRSRWDYLKKR
EEEKLEDLEAEIIDDEYLFSTDELTARERKELEYKRTLRDLAKDYKKAGAKEQEERKNRY
YMPEEKRSKEVPQRELELEETPMELGGEQGRWEEERLKTAALSFGAKKEREQGMRQEQEK
YQLLLEEDEMIDFVSSAITMKGTRTEKEQEAASLSQAELKKQSMQEVRRSLPIFPYREDL
LAAIQEHQILVIEGETGSGKTTQIPQYLLEDGYTNGGMKIGCTQPRRVAAMSVASRVADE
MSVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLH
TDILFGLIKDIARFRADLKVLVASATLDTERFSCFFDEAPVFRIPGRRFPVDIYYTKAPE
ADYLEACVVSVLQIHVTQPTGDVLVFLTGQEEIEACCELLQERCRRLGSKIAELLVLPIY
ANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMI
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFMVPGGDHLVLLNVYTQW
VESGYSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSDGDSVPIRKSVTAGYF
YHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWL
LEVAPHYYKSKELEDSSSKKMPRKQGKTKEELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccggtctggagcagtgggtgagtgaccgtctccatgacatcctggggttgagtgac
aggtatgtgtcacagttcatgatcggcacggcgcggaaagcgtcgagcgccgaagacttc
gtgactcgtctcgagcagacgggaacgatcgacatcgaccacagtgtttctgcgtttgcg
aaggagctcttcgagaagattcctcgtaaacaagtcgcagagaaaccgtcccgagcgctc
gaacgcgaagccatcgagatggacaagaagaatcggacgtacacgttgctggaggacagc
gacggcgacgaggacgccgtgacggagacgcagaaaggaaagaagaaaagcaaaagcaaa
gaccgaggaaacaagaggaagcacatcagacagaagaaaggcagcgagtcgtccagcgag
gacgaagcgcctcaaaggagtaattcaggggaccagaagtctgtgatgaaggaagacgag
gaggaggaggaggagtgggagaaggaggagagggagcggctgcaggacatcgaagagaga
gacgcgttcgcccagcgagtgcgggagaaagacaaagacaagacgcgcaacatcggcgag
aggacggacaaaaaggcgtacgaggaggctcagaagaggctgaagatggccgaggacgat
cagaagaacatgctgcccgagctgaggaagcgttctcgctgggactacctgaagaagagg
gaggaggagaagctggaggacctggaggcggagatcatcgacgacgagtacctgttctcc
accgacgagctgaccgccagggagaggaaggagctggagtacaaacggaccctccgggac
ctggcgaaggattacaagaaggccggtgccaaggagcaggaggagaggaagaacagatac
tacatgccggaggagaagaggagcaaggaggttccccagagggagctggagctggaggag
acgcccatggagctgggaggagagcagggccgctgggaggaggagcggctgaagacggcc
gccctcagcttcggcgccaagaaggagcgcgagcagggcatgaggcaggagcaggagaag
taccagctgctcctggaggaggacgagatgatcgacttcgtcagcagcgccatcaccatg
aagggaacccgcacggagaaggagcaggaggctgcgtctctgtcacaggccgagctgaag
aagcagtcgatgcaggaggtgcgacgcagcctgcccatcttcccctacagagaggacctg
ctggccgccatccaggagcaccagatcctggtcatcgagggggagacgggctccgggaag
accacccagatcccccagtacctcctggaagacggctacaccaacggaggcatgaagatc
gggtgcacgcagccccgcagggtggcggccatgtcggtggcctccagagtggccgatgag
atgagcgtgaagctcggcaacgaggtggggtacagtattcgcttcgaggactgcacgtcg
gagaggacggtgctcaagtacatgacggacggcatgctgctgcgggaattcctcaccgag
cccgacctggccagctacagcgtgatcatcattgacgaagctcacgagcgaacgctgcac
acggacatcctgttcggcctcatcaaggacatcgcccgcttcagggcggacctgaaggtt
ctggtggcgagcgccactctggacaccgagcgcttctcctgcttcttcgacgaagcgccc
gtgttcaggatccccggcaggaggttccccgttgatatttactacaccaaagctccggag
gccgactacctggaagcctgcgtcgtgtccgtgctgcagattcacgtcactcagcctacc
ggagacgtcctggtcttccttactggacaggaggagatcgaagcgtgctgcgagctgctg
caggagagatgccggcgcctcggatcgaagatagccgagctgctggtcctccccatctac
gccaacctgccgtccgacatgcaggcgaagatcttcaaccccacgccccccggcgcccgg
aaggtggtggtcgccaccaacatagcagaaacctcgctgactatcgacggcatcatctac
gtcatcgaccctggcttctgcaagcagaagagctacaacgcccgcacgggcatggagtcg
ctgatcgtgacgccgtgctcgcgggcctcagccaatcagagagcaggccgggcgggcaga
gtggctgctgggaaatgtttccggctctacacggcctgggcctttaagcacgagatggag
gaaacgacggtgccggagatccagaggaccaacctgggaaacgtcgtcctgctgctgaag
agtctcggtattaatgacctcattcactttgacttcatggacccgcctcctcatgagact
ctggttctggccctggagcagctctacgccctcggagccctcaaccacctgggggagctc
acaaagctgggtcgcaggatggcggagttaccggtggatcccatgctgagcaaaatgatc
ctggcctccgagcagtacaagtgctcggaggaggtgctgacgatagccgccatgctgtcg
gtgaacaactccatcttctaccggcccaaagacaaagtggtgcacgccgacaacgcccgg
atgaacttcatggtgccgggaggagaccacctggtgctgctcaacgtctacacgcagtgg
gtggagagcggctactccacccagtggtgctacgagaacttcatccagttccgctccatg
agacgagcgcgggatgtccgggaccagctggagggtctgatggatcgcatcgaggtggag
gtggtcagctccgacggtgacagcgtgcccattcgcaagtcggtgacggcgggatatttc
taccacacggcgcgcctgagcaaaggcggctacaagacggtgaagcaccagcagacggtg
tacgtccaccccaacagctctctgttcgaggagcagccacgctggctcatctaccacgag
ctggtcttcaccaccaaggagttcatgagacaggtgattgagatcgacagcggctggctg
ctcgaagtggctcctcactactacaagagcaaagagctggaggacagcagcagcaagaag
atgccccgcaaacagggcaagaccaaggaggagctgggctga
DBGET
integrated database retrieval system
