Brachyistius frenatus (kelp perch): 138631021
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Entry
138631021 CDS
T10614
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
138631021 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfre03021
]
138631021 (polr1a)
Enzymes [BR:
bfre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
138631021 (polr1a)
Transcription machinery [BR:
bfre03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
138631021 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
CDC45
HMG_box
Motif
Other DBs
NCBI-GeneID:
138631021
NCBI-ProteinID:
XP_069571829
LinkDB
All DBs
Position
Unknown
AA seq
1678 aa
AA seq
DB search
MLFGKEVPWRRMEGMSFGLYSPDEIRKLSVKAITNSRFLDAVGNVAPDSLYDLALGPADI
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLACHALTCPRAAMHLL
LSQLRLVDHGDMQQVYQVEQVLSQHLEENPKTTGDEIQRVLQEFTDAVVGGNTESSKNTR
QIKHLVAKKSSLINNFWKIHMKTRKCPHCKSSRSTVRREHNSKLIITMPSGGQTGGNTDT
HMMAGKRVYLTASTAREHITKVWETEGFFLKCLFSGLEESSASQDRDATFYSDLFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCSTIRKLLALIAEEKNPPEAEAAEQTDQ
TFLSVIPGVTLTDKLYNTWIRLQSHVNIVFDSDMDKLISEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGLPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRKTILSATNFTQREAVAKQLLTPSPGPHKMTMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQNELSRAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVFRGLTDRPGRVKLLPP
AVLKPQQLWTGKQVVSTLLLNVIPEKAVPLNLVGKSKIPSKAWIQVPPRAAPGYRPDSMC
DSQVLIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGKTSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANMRRKKIIQESLKIGTNTLRAAFNLPSNADQAEARGRWQDAHLDP
DQRDFSMADHKFKEVANQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
HRQFSFIEDNYEVIKRSQGLDEALARLDPQMASQHFTAIQRWKAKREVECPRRGAFLLFS
QKKLAKLKQTVEGTDPSSSRQLAALQLVKQWHSLDEGSRSKYTRKSSRCPEPSLGSLRPD
VCFGSVSENFHHITEKYLQSRGSVSEDGVDSHSLRQLLHYKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNRRALKKA
KMLRKKLARVCLAEVLQKVDVVETLRIENHHKLRAFKVTFHFLPPERYCDDKLLSPQQIL
HYMETRFFSLLLEAIKKRSAKLASIAVETRKATPRDKDNEGAADTAGVDDGEGGGEEEER
EIVDDQGNEGDADASDAKRKNKQEEEVDYDSGEEDEDDDAEDKDDQGEAEEDTNAAEESQ
PESAPKMKINRRRAAVEMRVNSVLQSISAIERYEFDQQQELWCELDLVLPMSKVHFDLTS
VLSALAQNAVVMETRGLTRCLLSETTTKTGEKETVLNTEGINMHEIFMYSDILDINRLYS
NEVHAMAKTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAI
TSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGTVVRGGTGLFELKQPLQ
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcggtaaagaggtgccgtggcggcggatggagggcatgtcgttcggcctgtac
tctcccgacgagatacggaagttgagtgtgaaggccatcacgaactccaggttcctggat
gctgttgggaacgtggccccggacagcctgtacgacctggccctgggcccggcagacatc
aaagaggtgtgttcgacctgctgtcaggacttcaacaactgcccgggacacctcggacat
gtggagttacctctacctgtatacaacccactgttctttgataaactctacttgctgatt
cgtggttcctgcctggcgtgtcacgccttaacatgtccccgcgccgccatgcacctgctg
ctgagccagctgaggttggtggaccacggagacatgcagcaggtctaccaggtcgaacag
gtcctcagtcagcacctggaagagaatcctaaaaccactggagatgagatacagcgggtc
cttcaggagtttacagatgcagtcgttggagggaacactgaaagttcaaagaacaccaga
cagatcaaacacctggtggcgaagaagagcagtctgataaacaacttctggaagattcac
atgaaaaccaggaagtgtcctcactgcaagagcagcaggtcgacggttcgtcgtgaacac
aacagcaagctgatcatcacgatgccgtcgggaggacaaaccggcggcaacaccgacacc
catatgatggctggaaagagagtctacttgactgccagcaccgccagagagcacatcacc
aaagtgtgggagacagaaggtttcttcctgaagtgtctgttctctgggttggaagagagc
tcggcgtcccaggacagagacgcgactttctattcggacctcttcttcctggagctgctg
gttgtcccaccctgcaggtatcgtccaatcaaccgcctcggtgaccagatgttcaccaac
ggtcagacggtcaacatgcaggcagtcatgaaggactgcagcaccatcagaaaacttctg
gctctcatcgcggaggagaagaaccctccggaggccgaggctgcagagcagacggaccag
acgttcctgtctgtgatccccggagtcacattaacggataaactctacaacacgtggatc
cgcctgcagagccacgtcaacatcgtcttcgacagcgacatggacaaactgatttcagag
aaataccccgggatccgacagatcctggagaagaaggacggattgttccggaaacacatg
atgggaaaacgggtggactacgccgctcggtccgtcatctgtccggacatgtacatcgga
accaatgagatcggattaccgatggtgttcgccaccaagctgacgtacccgcagcccgtc
acgccgtggaacgtgaaggagctgcgtcaggccgtcctcaacgggcccaacgtccacccc
ggcgcctccatggtgatcaacgaggacggcaggaaaaccatcctgtcggccaccaacttc
acgcagagggaagcggttgccaagcaactgctgacgccctccccgggtccacacaagatg
accatgaagatagtgaaccgtcacatcaagaacggagacgttctgttgctcaacagacag
ccgacgctgcaccgaccctccatacaagcccactgcgctcgcatcctgccgggagagaag
gtgctgcggctccattacgccaactgcaaggcgtacaacgctgacttcgacggggacgag
atgaacgcccacttccctcagaacgagctgagccgagcggaggcctacacgctggtgagc
accgaccagcagtacctcgtccccaaggatggaaaacctttagcgggtctgatccaggac
cacatggtgtcgggaacgaggatgacgatccgaggctgtttcttcagcagagaccagtac
accgagctggtgttcagagggctgacggaccgacccggcagagtgaagttactgccgccc
gccgtcctcaaaccgcagcagctctggaccgggaagcaggtggtatcgacgctgctgctc
aacgtcatcccagagaaagctgttcctctgaacctggtgggaaagtcaaagatccccagc
aaggcgtggatccaagtccctccgcgagccgctccggggtaccgacccgacagcatgtgt
gactcacaggtgctgatccgtcagggagagctgttggtgggcgttctggacaaagcccac
tacgggtcctcggcctacggtctagtgcactgctgctacgagctgtacggagggaagacc
agcggaaaactgctcagctgcctggctcgactcttcacggcctacctgcaactgtacaga
ggcttcactctgggtgtggaggacatcctggtgaaaccgggcgccaacatgcggaggaaa
aaaatcattcaggaatcactgaagatcggcaccaacaccctccgggctgcctttaacctg
ccctccaacgcagatcaagctgaggctcggggccgctggcaggacgcccacctcgaccca
gaccagagagacttcagtatggctgaccacaagttcaaggaggtggccaaccaggtcaac
aatgacatcaacaaggtgtgtatgcccatcggactgcacacctccttcccagacaataac
cttcaactgatggtccaatcaggagccaaaggatctactgtgaacaccatgcagatctcg
tgtctgctgggtcagatcgagttggagggccgcagacctccactgatgccttctgggaag
ttcctgccgtgcttccagccgtacgatccagcgcccggcgccggaggcttcgtgtccgga
agattcctgacgggcatcaaaccgcaggagtttttcttccactgcatggctggcagagaa
ggcctggtcgacactgccgtgaaaacgtctagatctggatatctgcagagatgcgtcatc
aagcatctggagggtttggtggttcagtacgatctgacggtgagggacagcgacgggtcc
gtggtccagttcctgtacggcgaggacgggctggacatccccaagactcagttcctgcag
catcggcagttctccttcatagaggacaactacgaggtcatcaagaggtcgcagggcctg
gatgaggcgctggcccgtttggaccctcagatggccagtcagcactttacagcgatccag
cgctggaaagcaaagagagaggtggagtgtccacgcagaggagccttcctgctgttttcc
cagaagaagttggccaaactaaaacagaccgtagagggaacagatccgtccagcagcaga
cagctcgctgctctgcagctcgttaagcagtggcactctctggacgaaggcagcagatcc
aaatacaccaggaagtcgtcgcgctgcccggagccctcgctgggttcgctcaggcccgac
gtctgcttcggatccgtgtcggagaacttccaccacatcacggagaaatacctgcagagc
cgcggcagcgtgagcgaggacggcgtggactcccacagcctccgtcagctgctccactac
aagtggcagcgctccctgtgtgacccgggcgaggcggtggggctgctggcggctcagtcc
atcggcgagccctccacccagatgaccctcaacaccttccacttcgccggcagaggagag
atgaacgtcactctgggaattcctcgactcagagagatcctgatggtggccagctccaac
attaaaacccccatgatgagtgtcccagtgctgaacaacaggagagccctgaagaaagct
aagatgcttcgtaagaaactggccagagtttgtctggctgaggtgctgcagaaagtggac
gtggtcgagacgctgcggattgaaaatcaccacaagctgcgggcattcaaagtcaccttc
cacttcctgcctcctgaacgttactgtgacgacaagctgctgtcaccccaacagatcctc
cactacatggaaacgaggtttttcagtctgctgctcgaagccatcaagaagcgctccgcc
aaactggcctccatcgccgtggagaccaggaaggcaacccccagagataaggacaacgaa
ggagcagcggacacagcaggagtagatgacggagagggagggggagaggaggaggagagg
gagatcgtggacgaccagggcaacgaaggagacgcagacgcttcggatgccaagaggaaa
aacaaacaggaggaggaggtggattatgacagcggggaggaggatgaagacgacgacgcc
gaggacaaagacgatcagggggaggcggaggaggacaccaacgcggcagaggagtctcag
cccgagtcggcgccaaagatgaagataaacaggaggagagcggcggtggagatgagagtg
aactctgtcctacagtccatctcggcaatcgagaggtacgagttcgaccagcagcaggag
ctgtggtgtgagctcgacctggtcttgccgatgagcaaggtgcacttcgacctgacctcg
gtgctgtcggcgctggcccagaacgccgtcgtcatggaaaccaggggcctgacgcgctgc
ctgctgagcgagaccaccacgaagaccggagagaaggagaccgtcctcaacacggagggc
atcaacatgcacgagatattcatgtacagcgacatcttggacatcaacagactgtactcc
aacgaggttcacgccatggccaagacctacggcatcgaggtggctctgaaggtcatcgag
aaggagatcaaagatgtctttgctgtctatgggatcgaggtggacccccgacatctgtcg
ctggtagcagactacatgtgcttcgaaggcgtttacaaaccgttaaaccgacacgccatc
acgtccaactcctctccgctgcagcagatgaccttcgagaccagctacaagttcctcaaa
caggccaccatgctggggtcacatgatcagctggtgtcgccctcagcctgcctggtggtg
gggacggtcgtccgaggaggaacgggactgttcgagctgaagcagcctctgcagtag
DBGET
integrated database retrieval system
