KEGG   Brachyistius frenatus (kelp perch): 138631410
Entry
138631410         CDS       T10614                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
bfre  Brachyistius frenatus (kelp perch)
Pathway
bfre03030  DNA replication
bfre03410  Base excision repair
bfre03420  Nucleotide excision repair
bfre03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bfre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    138631410 (rfc5)
   03410 Base excision repair
    138631410 (rfc5)
   03420 Nucleotide excision repair
    138631410 (rfc5)
   03430 Mismatch repair
    138631410 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bfre03032]
    138631410 (rfc5)
   03036 Chromosome and associated proteins [BR:bfre03036]
    138631410 (rfc5)
   03400 DNA repair and recombination proteins [BR:bfre03400]
    138631410 (rfc5)
DNA replication proteins [BR:bfre03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    138631410 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    138631410 (rfc5)
Chromosome and associated proteins [BR:bfre03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    138631410 (rfc5)
DNA repair and recombination proteins [BR:bfre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     138631410 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    138631410 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_22 AAA_24 RuvB_N AAA_14 AAA_16 ResIII DEAD AAA_assoc_2 DUF815 PhoH ATPase_2 AAA_7 AAA_5 AAA_19 AAA_30 TIP49 Thioredoxin_6 nSTAND3 AAA_2 Mg_chelatase AAA_25 DNAX_ATPase_lid bpMoxR DUF4119
Other DBs
NCBI-GeneID: 138631410
NCBI-ProteinID: XP_069572450
LinkDB
Position
Unknown
AA seq 335 aa
MASTSKAPLQTRNLPWVEKYRPQTLDELISHKDILNTIQRFISEEKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EYVVEQESIDLSPDGMKAIVTLSSGDMRRSLNILQSTNMAYGKVTEDTVYTCTGHPLRSD
IANILDWCLNKDFTTAYKQILQLKTLKGLALHDILTEIHLLVHRVDFPPAVRIVLLIKLA
DVEHRLASGTNEKIQLSSMVAAFQAVRDLVVSEAS
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcttctacaagtaaagcgccgttacagaccagaaacttaccatgggttgaaaaatac
agaccgcagacacttgatgaactgatctcacacaaagatattctgaacaccatccagagg
tttatcagtgaggaaaagctcccccacctcttgttctacggccccccaggaactggcaaa
acctccaccatcctcgcctgcgccaggcagctctacaaggacaaagagttcaactccatg
gtgttggagctgaacgcatcggatgacagagggatcgatgttgtccgaggtcccattctg
agttttgccagcaccaggaccatcttcaagaagggcttcaagttggtgatactggacgag
gccgatgccatgacccaggatgcccagaatgcattgcggcgagtgattgagaagttcaca
gaaaacactcgattctgtctcatctgcaactacctgtccaagatcatcccggccctgcag
tctcgctgcaccaggttccgcttcggcccgctgtccccggaccagatgatccctcggctg
gagtacgtcgtcgagcaggagagtattgacctcagtccagatggaatgaaggccattgtg
accttatcatcaggtgacatgagaagatcactcaacatattgcagagcaccaatatggcg
tacgggaaggtcaccgaggacacggtgtacacctgcacaggtcacccgctccgctcagac
atcgccaacatcctcgactggtgcctcaacaaagacttcaccacagcgtacaaacaaatc
cttcagctgaagactttgaaaggtttggctctgcacgacatcctcacggagatccatctg
ctcgtacacagagtggactttcctccagctgttcggattgttctgctcatcaagttagcc
gacgttgaacaccggctcgcctcggggaccaacgagaagatccagctgagctccatggtt
gcagctttccaggcagtgagagacctggtggtcagcgaggcctcttag

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