Brachyistius frenatus (kelp perch): 138632019
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Entry
138632019 CDS
T10614
Symbol
ddx46
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138632019 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfre03041
]
138632019 (ddx46)
Enzymes [BR:
bfre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138632019 (ddx46)
Spliceosome [BR:
bfre03041
]
Complex A
U2 snRNP components
U2 related factors
138632019 (ddx46)
Complex B
138632019 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
138632019
NCBI-ProteinID:
XP_069573377
LinkDB
All DBs
Position
Unknown
AA seq
1058 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRDRNRRERSRSRERRRSRSRDRKRA
RDRDRRRSRSRDRRRSGSRTRARRSRSGSAGKSRRTDEKPRSKEKDNLDPVSDKKKVKEE
KEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKKWSL
EDDEDDDEEGSALMEGDDDEDVDGKVERKEKEVKEEKKEEGDKEKEIPMEQQPEEDDVDP
LDAYMEEVKQEVKKFNMGAMRGNDKKGAMTVTKVVTVVKTKKGPHMHKKKGELMENDQDA
MEYSSEEEEVDLQTALTGFQTKQRKILEPVDHGKIQYETYRKNFYVEVPELAKMTTEEVN
SYRLELEGIIVKGKGCPKPIKTWVQCGVSMKILNAMKKHSYEKPTPIQAQAIPAIMSGRD
LIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPITVIMTPTRELALQITKECKKFSKP
LGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVLDEA
DRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPLEIQVGGRSVVCS
DVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADALLKDLMKASYPCMSLHG
GIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVINYNCPNHYEDYVHRAGRTG
RAGNKGFAYTFITDDQARYAGDILKALELSGSPVPPELEKLWGSFKDQQKAEGKSIKSSS
GFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKRVKDLS
APGASSGGSGSAASTAATPGGMPGLGPTSAGNIQKLEMAKRLALKINAQKNLGAEAQDVM
QQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAETVKRYE
EELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESA
NELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggggcgtgagtccagacattacaggaaacgctccgcgtcccgcgggcggtcgggtagc
cgatctaagagtcgctccccggacaaacgctccaagaaagacgaccgagaccggaaccgg
agggagaggtcacggagccgggagcgacgccgctcccggtccagggacaggaaacgagcc
agagaccgagacaggaggaggtccagaagccgagacaggaggaggtcaggcagcaggacc
cgagcccgcaggtcccgatctggcagcgctgggaagagcaggagaacagatgaaaagccg
agaagcaaagagaaagacaacctggatcctgtatctgacaagaaaaaggttaaagaggag
aaagaagatgagaaagttgaggatcaagactttgaccagaacaagctggaggaggagatg
aggaagaggaaggagcgcgtcgagaagtggagggaagagcagaggaagaaagccatcgaa
aacattggagagatcaagaaggaactggaggagatgaagcagggcaagaaatggagcctg
gaggatgacgaagacgacgacgaggagggttcggctctgatggagggagacgacgacgag
gacgtggacggcaaggtggagaggaaagagaaggaggtaaaggaggagaagaaagaggag
ggcgacaaggagaaggagattcccatggagcagcagcccgaggaggacgacgtggatcct
ctggacgcctacatggaggaggtgaaacaggaggtgaagaagttcaacatgggcgccatg
agaggaaacgacaagaaaggagcaatgaccgtaaccaaagtggtgacggtcgttaaaacc
aaaaaaggacctcacatgcacaagaagaagggtgagctgatggagaacgaccaggatgcc
atggagtactcctcggaggaggaggaggtggatctccagacggctctgacgggcttccag
accaaacagaggaagatcctggagcctgtcgaccacgggaagatccagtatgaaacctac
cgcaaaaacttctacgtggaggtgcccgagctggccaagatgacaactgaagaagtgaac
tcgtacagactggaactggagggcatcatcgtcaaagggaagggctgtcccaaacccatc
aagacctgggtgcagtgtggggtgtcgatgaagatcctcaacgccatgaagaagcacagc
tacgagaagcccacgcccatccaggcccaggccatccctgccatcatgtcgggacgagac
ctgatcggcatcgccaagaccggcagcgggaaaaccatcgctttcctcctccccatgttc
cgacacatcatggaccagaggcccttagaggagtccgagggacccattactgtaatcatg
actccgaccagagagttggctctgcagatcacaaaggagtgcaagaagttctccaaaccc
ctgggactcagagtggtgtgtgtttacggaggcacggggatcagcgagcagatcgctgag
ctgaagagaggcgccgagatcatcgtgtgcacaccgggaagaatgatcgacatgctgggg
gccaacagcggtcgggtcaccaacctgcgcagagtcacgtacgtggtgctggacgaagca
gacagaatgttcgacatgggcttcgagccacaggtgatgcgcattgtggacaacgtgcgt
cccgaccgccagacggtcatgttctcggccaccttccccagagccatggaggcgctggcc
cgcaggatcctgtccaagcccctcgagatccaggtgggaggtcgcagtgtcgtctgctcg
gacgtggaacagcacgtgctggtgatcgaggaggacaagaagttcttgaagctgctggag
attttgggtcactaccaggagaagggctccgtcatcatcttcgtggacaaacaggagcac
gcggacgcgctgctgaaagacctgatgaaagcctcgtacccctgcatgtctctacacgga
ggaatcgaccagtacgacagggacagcatcatcaacgacttcaaaaacggagcgtgccgt
ctgatggtggccacctcggtggccgccagaggcctggacgtcaagcagctgatcctggtg
atcaactacaactgtcccaaccactacgaggactacgtgcaccgggccgggcgcacgggc
agagcgggcaacaagggcttcgcctacaccttcatcaccgacgatcaggctcgctacgcc
ggtgacatcctcaaggccctggagctgtctggctctcccgtcccgccggaactggagaag
ctttggggctccttcaaagaccaacagaaagccgagggtaaatccattaagagcagcagc
ggcttctctggaaaagggttcaagttcgatgagacggaacacgctttggccaacgagagg
aagaagctgcagaaagctgctctcggactgcaggactccgacgacgaggacggagccctg
gacatcgaggagcaaatcgagagcatgttcaactccaagaagagggtgaaggatctgtcc
gctcccggagcgtcgtccggaggttcgggatccgccgcgtcgacggccgccacccccgga
gggatgccgggcctcgggcccacgtccgccggaaacatccagaaactggagatggccaaa
aggctggcgctcaagatcaacgctcagaagaacttgggagccgaggctcaggacgtgatg
cagcaggccaccaacgccatcctgcggggcggcaccatcatgacgccctccgtgtcggcc
aagaccatcgcggagcagctggcggagaagatcaacgccaagctgaactacaccccggtg
gagaagctggaggaggagcggcaggccgccgagcaggccgagaccgtcaagagatacgag
gaggagctggagatcaacgacttccctcagacggccaggtggaaggtgacgtctaaggaa
gctttgcagaggatcggcgaatactccgaagccgccatcaccatcaggggaacctatttc
cctccaggcaaagagcccaaggagggagaacgcaagatctacctggctatcgagagtgca
aatgaactggctgtgcagaaagccaaaacggagattacacggctaatcaaggaagagctc
atcagattacaaaactcgtaccagccgacgagcaaaggccggtacaaagtgttgtag
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integrated database retrieval system
