Brachyistius frenatus (kelp perch): 138632560
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Entry
138632560 CDS
T10614
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03440
Homologous recombination
bfre03450
Non-homologous end-joining
bfre04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
138632560 (rad50)
03450 Non-homologous end-joining
138632560 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
138632560 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfre03032
]
138632560 (rad50)
03400 DNA repair and recombination proteins [BR:
bfre03400
]
138632560 (rad50)
DNA replication proteins [BR:
bfre03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
138632560 (rad50)
DNA repair and recombination proteins [BR:
bfre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
138632560 (rad50)
BRCA1-C complex
138632560 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
138632560 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
zf-met
AAA_29
AAA_13
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
138632560
NCBI-ProteinID:
XP_069574315
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDQQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFCDVNGQKVTVQRSMSCTQKAKNNSFKRLEQVITR
IIDGKKVSMSSKCCDVDLEMISCLGVSKSVLNNVIFCHQEESNWPLSEGKALKDKFDSIF
SATKYIKALDTMRQLRLKQSQTVKECQLELRYLKQNKEKAQHIRETLGTKEAQLIASRDS
VQQIDSQIDPLETRLVAIELKLGKVMKLDNDIKALDSRKKQMEEDNRELEETMEQVFQGS
DEQLQEIYQNHQRTVKEKERRLTDCQKELERAGRECQRLNRVNADLLVEQGRLQLEADHH
TQNIKNRDTQVRSLSSYLEMEGYDRPPFTTLQLDSFHRQATQRLEQEKETVSQVMADLHE
KEQQKQQYIDEMRDKKTGLERTVELKRDLQGKKQQELRDIRADLQRLEGSSSRLQELENE
LAKAERELQSAVQSSNVEELKAEVVELQREKAELDRTQRQLDQEMEALNTHTTARTQMDM
LKKDKTEKEEQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYSKSKEINSTRDRLVKLNKD
LASSEQNKSHISAELRKKEQQLTSNEEKFFNVCGSQDLEQDLSKLQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKKDDMMALRPVKQSIVQFQENELPELRNRLQTVNREIERLKGDVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLKEVERKIAQQAAKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQMLKSAVNETRAEKLQLSSDMQKQQQLEEQCVEFTTEIQA
LTRDIREAKEQLSPLSAALEKLQQEKQELVERKRQRQEEGQEKINSIKEKVKAITSLERD
VTTYVNEGKDEYKEQKESELQETNTRLHEAEKNKEKINKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKDVVARREALLKDMGNMQVMQLHQERREAERKLEDLKKNRSIALGRQKG
FEEQILEHRKELREDQYDKADERYKNKMIAMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSYAGTKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALIEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFFRIRKDRDQNSEITKCTIASLSSYVR
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatcctgggggtgcggagctttggggtcgaggataaa
gatcaacaagtcatctcgttcttcactccgttaactgtgctggtcggacccaatggagca
gggaaaacgactattattgaatgccttaaatatgcaacatcaggagaacttccacctgga
tcaaaaggaggtgcttttgttcatgatccaaaggatgcccatgagacggacgtacgagca
cagattcgtctcttattctgtgatgtcaacggacagaaagtgaccgtccaacgctccatg
tcctgcactcagaaggcaaagaacaactccttcaaacgcttagagcaggtcatcaccaga
ataatagacgggaagaaagtgagcatgtcttctaaatgttgtgacgtggacctggagatg
atttcttgtctgggtgtgtcgaagtctgtgctgaataacgtcatcttctgtcaccaagaa
gagtctaactggcctctcagtgagggcaaagccctcaaagacaagtttgactccatcttc
tctgcaaccaagtacatcaaagctctggatacaatgcgtcagctccggctcaaacaaagt
cagacagtcaaagagtgtcagctggagctgcgctacctgaagcagaacaaggagaaggcc
cagcacattagagagactctgggcaccaaggaggctcagctgatagcctcaagagacagt
gtgcagcagatagatagccagattgatccacttgagactcgactggtagctattgaactg
aaacttgggaaagtaatgaagctggacaacgatatcaaggctttggacagcaggaagaaa
cagatggaagaggacaacagggagctggaggaaaccatggagcaggtgttccagggttca
gacgaacagctacaggagatttaccagaaccaccagaggacggtaaaggagaaggagcgc
aggctgacagactgccagaaggagctggagagagctggccgagagtgccagagactcaac
agggtcaacgctgatctcctggtagaacaaggtcgtcttcagctggaagccgaccatcac
actcaaaacatcaagaaccgtgacactcaggttcggtctttgtcatcctatctggagatg
gagggttacgaccggccgcccttcaccactcttcagctcgacagttttcatcgtcaagcc
acacagagactggagcaggaaaaagagacagttagtcaggttatggcggacctgcatgaa
aaggagcagcagaagcagcagtatattgatgaaatgagggataagaagactggcctggag
agaacagtggagctgaagagagacctacagggaaagaagcagcaggagctgagggacatc
agggcggacctgcagaggctggagggttcatcgagtcgactgcaagagctggaaaatgaa
ttggctaaagcggagcgtgagctgcagagcgccgtgcagagctccaacgtggaggagctg
aaggcggaggttgtggagctccaaagagaaaaggccgagcttgaccgcacgcagagacag
ctcgaccaggagatggaggcactcaacacgcacacaactgcacgcacgcagatggacatg
ctgaaaaaggacaagacagagaaggaggagcaggtgcgtaagatcaagtctcgtcacagc
gaggatctggtgtccctactgggccactttcccaacaagagagagctggaggactggatc
tactccaagtccaaggagatcaacagcaccagggacagacttgtaaaactcaataaggac
ttggcatcaagtgagcagaataaaagccacatttccgccgaactgcgcaagaaggagcag
cagttaaccagcaatgaagagaagttcttcaacgtgtgtggcagtcaggatctggaacag
gatctcagcaagctgcaagaagatctggagaagatatccaaacaaagagccatgctcgct
ggagccacagcagtgtacacccagttcatcagtcagctgacggaggagagggagccctgc
tgccccgtgtgccagcgaacgttcccctcagagtccgatctgcaggaagttatcagcgac
atgcagtcgaagctgcgcctggtgccggacaaactgaaaaacacagagcaggacctgaag
aggaaggagaggaagaaagatgacatgatggccctcagacctgtcaagcagtccattgtt
cagtttcaggaaaatgagctgcctgagttgagaaaccgtctgcagactgtgaacagagaa
attgagaggctgaagggtgacgtggaggagcaggagactctgcttgggaccctgatgtct
gaggaggaaacagccaaggcctgcctgcaggacatatctctcatggacagatacctgatg
gaccttaaagaagtggagaggaaaatagctcagcaggcagctaaactccagggagtagac
ctgaccagaaccatccagcaagtcagtcaggagaaacaagaaactcagcacaagctggac
actacctccagcaagatggagctgaaacgtaagctgatccaggaccagcaggatcagatt
cagatgctgaaaagtgccgtgaatgagacgagagcagagaagctccagctgagcagtgac
atgcagaagcagcagcagctggaggagcagtgtgtcgagttcactaccgagatacaggcc
ttaaccagggacatcagggaggcaaaggaacagctgtctcctctgtctgctgctctggag
aaactgcagcaggagaagcaggagctggtggagcgcaagaggcagaggcaggaagaaggg
caggagaagattaattctattaaagagaaagtaaaggcgatcaccagcttggaaagagac
gtcactacatacgtcaatgagggcaaagatgaatacaaagagcaaaaggagtccgagctt
caagaaaccaacactcggctccatgaggcggagaagaataaagagaagattaataaggag
atgggaaacattcgtcaggacatagacactcaaaaggtccaggagcgctggttacaggac
aacctgaccttgaggaagcgtgttgaggagttgaaggatgtggtggccagacgtgaggct
ctgctgaaagacatgggcaacatgcaagtcatgcagctacaccaagaacgtcgtgaagcg
gaacgcaagttggaagacttgaaaaagaaccgcagtattgcactgggtcgtcagaaaggc
tttgaagagcagatactggaacacagaaaagaactgcgagaagatcagtatgacaaagcg
gatgagcgctacaaaaacaagatgattgcgatgaggaccacagagctggtcattaaagac
ctggatctctattacaaggctcttgatcaaaccatcatgaaattccacagcatgaagatg
gatgagatcaataagattatcagagacctgtggcgcagcacctacaggggtcaagatatc
gagtacgtggagatcagatccgacgtggatgagaattcgtacgctggaacgaagcggaga
gtttacaactacagagtagttatggtgaaaggagacaccgctttggacatgaggggacgc
tgcagcgctggacagaaggtgttggcatccctgatcatccgtctagctctggccgagacg
ttctgtctgaactgtgggatcctggccctggatgagcccactaccaacctggaccgggag
aacatcgagtcgctggcacacgccctgatcgagatcattaaaagtcgctctcgccagagg
aacttccagctgctcattatcacccacgacgaggacttcgtggagctgctggggcggtcc
agctacatcgaacacttcttccgcatccgtaaggaccgggaccagaactccgaaatcacc
aagtgcaccatcgcctcactctcctcctatgtccgctaa
DBGET
integrated database retrieval system
