Brachyistius frenatus (kelp perch): 138632613
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Entry
138632613 CDS
T10614
Symbol
tnr
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre04510
Focal adhesion
bfre04512
ECM-receptor interaction
bfre04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138632613 (tnr)
04518 Integrin signaling
138632613 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138632613 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bfre00536
]
138632613 (tnr)
Glycosaminoglycan binding proteins [BR:
bfre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138632613 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
EGF_Tenascin
FN3_Tor_3rd
EGF_2
Interfer-bind
Fn3_VIN3
Fn3_Dep-1_2nd
NDNF
DUF4998
DUF7949
Motif
Other DBs
NCBI-GeneID:
138632613
NCBI-ProteinID:
XP_069574424
LinkDB
All DBs
Position
Unknown
AA seq
1386 aa
AA seq
DB search
MLLALRHHRGTVPTASWILAFALFLTLQGATHAAPSGDNKLVRTTRVRRQTPEGDQPPSD
SLANQTLREQPVVFNHVYNINVPLESLCSVDLDTSAPPAPGDDSRAELGSRPSMEGPMDP
NGPTEYTEQTLDADSQVTFTHRINIPKAACGCQSTATVQQLATRVEMLEREVSLLRAQCG
SGCCGESSAMGRLDFVPGCSGHGSFSFDMCGCICEEGWTGKNCSEPRCPNDCSGQGVCVE
GECVCDRDFGGDNCSEPRCPSDCSGRGLCIDGECVCEESFTGEDCMVGRCLNDCSDQGLC
INGTCQCRPGYVGEDCSLVYCANNCSKKGVCKEGFCVCQDGFAGDDCNSVAPAMSLNVRG
VTDRTIDLEWEGSVVLTDFLVTYTPSSPGGVQLEIRIPGNMTTCTISGLEAGMEYNINVF
AVINNSISVPASITVWTYISNPDVLVFKSITETSVEVQWQPFYYSFDGWEISFIPKDNDG
GMTAQLPSTITSFIQTGLRPGEEYTINLVALRDQGRSQPVTATVTTLIDGPTQLIVRDVS
DTVAFVEWTPPKAKIDQIVLRYGLVGGEGPRTTFRLQPTLSQYSLQVLRPGSRYEVSVSG
VRKGNESGSISTEFTTALSFFSEIDAPKNLRLVSKTSTILELEWDNSEAEVESYQVVYST
LAGDMYDKVIVPRNEGATTKTTLTDLLPGTEYGIGISAMQGSNQSTPATMNARTGLDVPM
DLTVTASTDNTITLVWGIVQGPIDHYKVTYTSSSGITTEVTVPKDVTTTTLTDLEPGTEY
TITVAARRGRQQSTAATIDAFTGIRPVTHLYLSEVTSDSVSVAWSAPAPPADLFILSYSS
ADGTDTSKVTLDGSKTRSLVQGLLPSTQYTISLITIQGDATSEPITASLTTGMDPPKEMT
VSDVTEDAVTISWIKPLAPFEYYKLSYQSARGRVDSVVIDSEVTNYTLSSLFPATEYEIS
LNAVRGSQESKVISTSVFTAMDMPAELTALNITPQGALLRWNPPLSNVDNYVLTLTHNQV
TADTFLVEGNTQEHQLSNLKPSTTYSVSLYATKGPLTSGTVITNLQTPMDAPLNLTASEV
NHRSALISWQPPIAEIDNYMLTYKSADGSRKELILDAEDTWIRLEGLAETTEYTVKLQAA
RGLDTSAVVSTTFTTGSRLFATPQNCAQHLLNGETLSGVYTIYINRDPSQGVQVYCDMAT
DEGGWIVFQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNVQRIAAQGRYELRIDMRD
GQESVYANYDKFSIGDARNLYKLRIGEYNGTAGDSLSYHQGRPFSTKDRDNDIAVTNCAL
SYKGAWWYKNCHRANLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPFNFRSISSKR
RRSAPV
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgctactggcactgcggcatcaccggggcactgtgcccacagcaagctggatcctggct
tttgctctgtttcttactctacagggtgccactcatgctgctccatcaggagacaacaaa
ctggttcgtaccaccagagtgaggaggcagaccccagagggggatcagcccccctctgat
tccttagccaaccagaccctgcgggagcaaccggtggtctttaaccacgtctacaacatc
aatgtacccttggagtctctgtgctccgttgacctggacacctccgcaccgcccgccccg
ggtgacgattctcgtgctgagttggggtccagaccctccatggagggtccgatggatcca
aacggaccaacagaatacactgagcagacgctggatgctgacagccaggtaacattcact
caccgcatcaacatcccgaaagcagcatgcggttgtcaatcgacagccacagtccagcag
cttgccaccagggtggagatgctggagagagaggtttccctgctcagagctcagtgtgga
tctggctgctgtggggagagctcagccatgggccgcttggactttgtcccaggttgcagc
ggccacggcagcttcagctttgatatgtgtggctgcatctgcgaggaaggctggactggc
aaaaactgctccgagccccggtgcccaaatgactgttccggtcagggtgtgtgtgtcgaa
ggggagtgtgtgtgcgaccgtgactttggaggtgacaactgttcagagccgcggtgccct
tcagactgctcaggccgtggtttgtgtatcgacggggagtgtgtgtgcgaggagtccttc
acgggcgaagactgcatggttggaaggtgtctcaatgactgctcggaccaggggttgtgt
atcaacgggacgtgccagtgccgacccggatatgtgggggaggactgctcactggtctac
tgtgccaacaactgcagcaagaagggagtctgcaaggagggtttctgtgtctgtcaggat
ggcttcgctggagatgactgcaactctgtggcaccagccatgagtttgaatgttcgaggg
gtaacggatcgaactattgacctggagtgggagggttcagttgtgctgacagatttctta
gtgacctacacaccgagcagccccggaggtgtgcagctcgagataaggattccaggcaat
atgaccacctgcaccatctcagggctggaagcaggcatggagtacaacatcaacgtgttt
gccgtcattaacaacagtatcagcgttcctgccagtattactgtgtggacctatatctcc
aatccggatgttttagtcttcaaatctatcactgagacgtcggtggaggtccagtggcaa
cctttctactattccttcgatggatgggagatcagcttcatccccaaggacaatgatgga
gggatgactgcacaactgcccagcaccatcacttcatttatacaaactggtctgaggcca
ggggaagagtatacaattaacctggtggcactccgagaccagggtcgaagccagccagtc
actgctactgtcacaacattgattgatggccccacacagctgattgtgcgggatgtgtca
gacactgtggcattcgtggaatggacaccaccaaaggcaaagattgatcagattgtgttg
cgttatggcctcgtgggaggagaggggccacgcaccaccttccgcctccagcccacactt
agccagtactctctgcaggttctgcgtcctggctcgcgctacgaggtgtcagtgagcggt
gtgaggaaaggaaacgagagcggatccatttccactgaatttactaccgctttatcgttc
ttctcagagatcgatgcccccaagaatttgcggcttgtgtccaagacctccaccatcctc
gagcttgaatgggacaacagtgaagctgaggtggagagctaccaggtggtgtacagcact
ttagcaggagatatgtatgataaagtcattgtgccacgcaacgagggagccaccactaaa
actactctcacagacctgctgccaggcacagagtacggcatcggtatttctgccatgcag
ggtagcaaccagagtacaccagccacaatgaacgccaggacgggtctcgatgtacccatg
gatctaactgtgacggcttccacagacaacaccatcactcttgtgtggggcatcgtccag
ggcccgatcgaccactataaggtcacctacacgtcttcctccggcatcacgactgaggtg
acagtccctaaagatgtaaccaccaccactctgacggaccttgagcctggtaccgagtac
accatcactgtagcagccagaagaggacggcagcagagcactgcagctaccatagacgcc
ttcacaggaatcaggcctgtaacccacctctacttgtcagaggtgacttcagactcggtg
tcagtggcgtggagtgccccagcgccgcctgctgacctcttcattctgagctacagctct
gccgacgggaccgacacctctaaggtgacgctggacggctccaagacgaggtcactggtc
caggggctgctgccgtctactcagtacaccatcagtctaatcacaatacagggggacgct
acctctgagcccattacagcatcactcactacaggcatggacccaccgaaagagatgacg
gtgtcagatgtgaccgaggacgcagtgactatatcctggatcaaacctctggctccattt
gaatactacaaactatcctaccagtcggccagaggtcgagtggacagcgtggtgattgac
agcgaggtgacaaactacaccttgtccagtctgtttcctgctacagaatacgagatcagt
ctcaacgccgtcagagggagtcaggagagcaaagttatcagcacttctgtgttcacagcg
atggatatgccagctgagttgacggccctcaacatcactccacaaggagccctgctgagg
tggaatccccctctgtccaatgtagacaactacgtgctgaccctcacacacaaccaggtg
acggctgatactttcctggtagaaggcaacacgcaggagcaccagttgtccaaccttaag
ccgagcaccacctactcagtatccctctacgccaccaaaggacccctcactagtggcacc
gttatcaccaacctccaaacgcccatggatgcacccctgaacctgacagccagtgaggtg
aatcaccgcagtgctctcatttcctggcaaccaccaatcgcagagattgacaactacatg
ctcacctacaagtcagccgatggcagccgtaaagagctgatactcgatgcggaagacacg
tggattcgactggagggactggctgagactacagagtacactgtcaagctccaggctgca
agaggactagacaccagcgctgtagtctccactacctttactacagggagtcgtctgttt
gcaacacctcagaattgtgcccaacacctgctgaacggtgagactctgagcggcgtctac
accatttacatcaacagagaccccagccagggtgtgcaggtgtactgtgacatggccaca
gatgaaggaggctggattgtattccagcgtcgacagaatggcctgacggacttttccagg
aagtggagtgactatcgggttggctttggaaacctggaggatgagttctggctcggtctc
gacaacgtccagaggattgctgctcagggccgttatgagctgaggattgacatgagggac
ggacaggagtcagtctacgccaactatgacaagttctccattggagacgcaagaaacctt
tacaagctcaggataggagagtacaatggcactgctggtgactctctgagctaccaccag
ggccggcccttctccacaaaagacagagacaatgacattgctgtcactaactgtgccttg
tcttacaaaggagcctggtggtacaagaactgccaccgggccaacctcaatggcaaatac
ggcgagtccagacacagtcagggtatcaactggtaccactggaaaggccacgagttctct
attcctttcgtggagatgaagatgaggccattcaactttcgtagcatcagcagcaagagg
aggcggtctgcccctgtataa
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