KEGG   Brachyistius frenatus (kelp perch): 138632638
Entry
138632638         CDS       T10614                                 
Name
(RefSeq) collagen alpha-1(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
bfre  Brachyistius frenatus (kelp perch)
Pathway
bfre04382  Cornified envelope formation
bfre04510  Focal adhesion
bfre04512  ECM-receptor interaction
bfre04518  Integrin signaling
bfre04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:bfre00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    138632638
   04518 Integrin signaling
    138632638
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    138632638
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    138632638
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    138632638
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:bfre04147]
    138632638
   00536 Glycosaminoglycan binding proteins [BR:bfre00536]
    138632638
Exosome [BR:bfre04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   138632638
Glycosaminoglycan binding proteins [BR:bfre00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   138632638
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 138632638
NCBI-ProteinID: XP_069574466
LinkDB
Position
Unknown
AA seq 1613 aa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NT seq 4842 nt   +upstreamnt  +downstreamnt
atgggaaggcaagtgtttgtagtcccactgatcctgtttgctgtgatgctgatggtgacc
gagggaaaaaagtgtgtgtgcaatggaaaatcaaggtgccactgtgcaggggtgaaaggc
aacaggggacacaaaggatttctaggagatccaggtctgccagggtcacagggcgttcca
ggatcaaatggtcaccctgggccaacgggatcaaagggcaacactgggcattatggacca
atgggaccaaatggcgatccgggacctgaaggcaaagagggatttgcagggtctcatggc
ttaccaggtgttccaggccttcagggggctccaggtgccccaggggccccaggctgcaat
ggaacagatggagaagatggacttcctggctatcttggggccaatggtattgatggactc
ccaggtccaccaggtcagcctggactgaagggagatccaggtttccctggagacagtgga
ccactgggggaccctggacaaccgggatctgctggacaagaaggcataaatagtgtcgca
ggaccgcaaggacgaaagggggtacaaggcccatcaggcctaccaggaccaccaggtcgc
attaaggagtatttttcagagggttacgccttaaagggtctaaaaggagacaaaggaaac
gtaggatataaaggctgcaagggtgaaccaggagaccctggttatggcaattttgtagaa
ggagaaaagggtgacaaaggacacccgggtcaagaaggaaagccagggaaggatggggat
cctggacaatcaggatttaggggaagacctggactaaaaggtgaaccgggatatccaggg
acaccaggaaggctgggtgaaaagggaaataggggtccccctggaccgcctggagatata
tatgggcctgtgattgacccctttaaaggatacatgggagatcctggacctccgggcaca
cctgggctcgctggtcctcaaggttatggatctgggactgggtcttatgtgccagggcca
cgtggtcccactggatttccaggccctaaaggggacagtggtgaccctggggatatttat
agaggactaccgggtctagatggggatcatggtgatcaggggcccactggggatcagggc
cctcctggaccccctgaagacagaaacgtcaatattaccaagggtctcccaggaatgaag
ggagtggagggtctgcctggacctatgggatatgatgggatatttggaaagaaaggagaa
aagggggagccttgttatgagtgtagttcacctggacttccaggaccaccgggtccccac
ggaccacctggccctcctggtaataatcaaggaccaggcgaaaaaggtgatccaggctac
ccaggacctagaggatcacctggaggacctggtcccattggtgaaactggatttccaggc
cctacaggacaaaagggagacttgtattctgacaggagtcgtggggtaaaaggagtaaaa
ggagacccaggatattctggcaggcctggtgcagatggtcaccctgggcctcctggatta
tcaggtcgaaaaggcaatcaaggacctccaggggattcgtatcccggccctgatacgaag
ggagaccgtggtcccccaggtccaccggggcctttaggcagaacgggaccggttggctac
cctgggccagtgggatacggacctgctgggcttccaggaaataaaggagatgatgggatt
cctggctttccaggacagcctggaattccaggccaaaaaggggaatctggtctcatcatc
atcaaaggacttcctggaccacgaggattaaagggtcagccaggctcacatggaagccca
ggttatcaagggggaccaggaagcccaggaagaacaggttttccaggacagaaaggagaa
agcggtgacatgtcaactcccggaaggcctggaatcccaggaccgaaaggtgctaagggg
cagccaggtgacccaggctctccaggacatggctcgcctggtcggccgggtccacgaggc
gttcctggtcgtacaggactgaagggtgatggtggtccaggataccttggccctccaggc
cccccaggacgtcccggggaagatggagctccaggtccagcaggtgatggtgggatccct
ggcccacctggggagcaaagatcaagaggcaatcctggatatccaggagaaaaaggaaga
aaaggttctgtaggtattccaggagagccaggcggcaaagactgtaaagttcctttacct
ggaccagcaggaccaccaggaccaaatggttatccaggacatacaggtcctaacggtttg
cctggggagaagggaaatgcaggtttgcctgggttcggtcgtcctggccctcctggtgat
cccggttttctggggccatcagtccaaggtccacaagggcttgcaggacaaaaagggaaa
aggggagaaattggactgcctggtcaaccaggaccgagaggagaccctggaccagatgga
ataacaggacatggaccagaaggaccacctggcattataggaccaccgggtcaaataggt
gaccctggccgagatggagccaggggtttcccgggttccccaggaattgatggggtccca
ggcttgacaggtcctcccggggttcaattaccaccttcgaacataactggggaacaagga
gaccgtggccaaccaggtcaacctggtctacctggtcccaatggagatactggaagaact
ggactgaaaggggagagaggacacaatgggggatcagggcgtcccggaccaaagggtccc
caaggtgatccaggttttgatggattaggggttataggaattccaggacctcaaggagag
ccaggagacccaggatttattggccctccagggtacaagggaatacaaggagatccagga
tatcctggagggccaggttccaatggttctccaggttcacctggttataaaggagttact
ggcgagccatactatggatatggatcacctggacgagtaggacaaaagggggaaaaaggt
tcagaaagtaattttgtgaggaagggtcagaagggagaacctggttttgcggggccagca
ggtccaccaggatatcatggagacaaaggaaacccaggatctagaggagaaaatggtccg
ccaggctatcaagggccaaaaggtttagatggccctccaggaagaaaaggaccaccagga
cctaatggacagccaggtgaccggggccagtcaggtgtcggtggtggtccaggtcctaaa
ggcgaccagggccgtgatgggttccccgggccacgaggggagaagggggacacaatcaat
ttaaaagggatgcctgggaggcccggtgaaccaggtcccaacggtgatcctggagacctt
ggtcctcctggcctgcccattttcggtggtcctggaacaataggggacacaggacgtcca
ggtccacctggcagatcaggtccaaaaggacaaccaggaagagaaggggcatgtgttcct
ggctctaaaggagaccgtggccaccctggcaatcacgggagcagaggctatccaggccca
cctggccctccgggtcccacagtgcctgggttaaaaggagacagaggggacccaggtcct
tcaggaggtccaggttatagtggggcccaaggagatccaggccctcggggaccacctggt
ccaattggcagacctggaggcccagggccaagaggtcactctggtcctcctggatttcaa
gggccgcctggtgacaaaggagacccaggatacatcccaggcccgcctggtcctcctggt
cctcctggtgtcccaggacatccaggcttgaaaggtcaaccaggaattaccaagtggatt
gttgaaccaggacctcctggcccacctggtccaccaggccaccgaggaccaaaaggggac
ccgggtccatcgggaccatcaggccctccaggcccaacaggtgtcaaaggaacacctggt
ttcagcccacctggccagcccggatttactggccataaaggagacaaaggaagcgcggga
ctgacaggcccagagggcagacctggaaacccaggccaaaagggtcctccaggtttgccc
ggcaggaccgtttcagattatgttgatggtttcctgatcatcaagcacagtcagagcatc
catgtccctgactgcccttttgggaccagccacatctactctggatactcctttgtattc
atcaatggaaatgagagagctcatggtcaggaccttggcaccatggggagctgtctccct
cgtttctccaccatgcccttcctgttctgtgacacagaaagtacctgccgctatgcttct
cgcaatgactactcatactggttgtccactgacacgccaatgcctgtcaacatggttgcc
atcacaggggaaaagctagcctcttacattagcaggtgttcagtgtgtgaaaccacctcc
aatgttctagccatccacagccagacaactcggataccagaatgtcccagtggctgggaa
tctctgtggactgggtactcatttgtcatgcaaacgggtgcaggagcagaaggttcctct
cagcctctggtttctcctggctcatgtctggaaaatttccaccgagtgccctttattgag
tgtcacggcagggggacgtgtaactactaccctgattcctatagctactggctggcctct
ctggacccgaacaacatgttcagtaaaccagttcctcagacagtaaagggaccttctctt
caaaatgtcatcagccgttgtcacgtctgcagaaaactatag

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