Brachyistius frenatus (kelp perch): 138633169
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Entry
138633169 CDS
T10614
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138633169 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138633169 (smg7)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
138633169 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
138633169 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
138633169
NCBI-ProteinID:
XP_069575356
LinkDB
All DBs
Position
Unknown
AA seq
1193 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSNTSAIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
SKWSVSDFIRAFIKFHGHVYLSKSLDKVDALREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDLTADGGEQSYSSEQQISWFQLLGLFMSFLGVMCSRVLLNKNRGEEIMGECP
LPAIKVSLDWLKLRPSVFHEAAVDKRQHIWPWLVSILNSFQPKEDDVSCSSVTPLPEEFE
LQGFLALRPALRCLDFTKGHQGILVDRDGLPVHARHQRLISLGKWVADNQPGLIQCRVSE
DGLLVFITDIPEQAIVEPQEKEVPVLQESSNGEQTANDGGNAGLKSVLSAGKTQSSWPDG
GDRPVVTFKENIKPREQSREPTRNHHQKDVGKERRDFCKGNGAAGKGDLKRDGKRKSELK
KTGHEKTADAGKLVKAQTELRKTPVSEAKKTPVTQAQTTCSSQFIPIHHPGAFPPLPSRP
GFPPSAYVIPPQVGFPGLQVNPGFTFSTGVSVPGPFLQPTVHTQAGGQVQAGKQSHIPYS
QQRPSGPGPSGQGPMSQGPSQGQPPQGQAPSQQALQQSVQLQVQAMSQQQQSPTKPVQQV
GMGKSPPHHPGLQQYMQEQPAQMWNQAQAALQKLSPMQISMKQPQQQQQQQAFYMAAQDP
MKMYEHQLQPPAQPQHPNMDKKMKYPDVKMQDFYWEPSYRMGDGLAVMADRMKRPPPGGI
CPEQEVPAGPRGPPFEDNKSSPLLPPDLLKTLADFEEEEELVFTKPPDFFQALAGPLSTA
PGPNIFLPNQTRMESGPEVGGQSSSLLPMSGFPMQEYNQNSIFSQAYGKNLPPSSKPDAP
MVHQEPSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGAMPFSNF
GPIGTPDSRDRRVVDRWKADKTGAVSGFGLDYLPAAASSAASDNSWHQAGPTGSSWTNQE
SPMEESSSTVLLDSFKSIWSSSMMQPGPSALEQLLLQQKQKQQRGHGTMNPPH
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccagtatcttcgacaggcagaggccctgaaggctgacatgacagat
tcgaagctgggggcggcagaggtgtggacgtctcggcaggccctgcaggacctctaccag
aagatgctggtgacagatctggagtacgctctggacaagaaggtggagcaagacctgtgg
aaccatgcttttaagaaccagatcacgacgctgcagagccaggccaagaaccgggccaac
cccaaccgcagcgaggtccaggccaacctgtcgctgtttctggaggcagctagcggcttc
tacacgcagttactgcaggagctgtgcactgtgttcaacgtggacctgccctgccgcgtc
aaatcctctcagctcggcatcatcagcaataagcagagcaacaccagcgccatcgtcacc
ccacagcccagctcctgctcctacatctgccagcactgcctcgtccatctcggagacatc
gcacgttatcgtaaccagaccagccaggccgagtcttactaccgacatgcagctcagctg
gttccatcgaacggtcagccctacaaccagctggccatcctggcctcctccaaaggagac
cacctcaccaccatcttctactactgccgcagcatcgcggtcaagttcccgttcccggcc
gcctccaccaacctgcagaaggctctgtccaaggctctggagagtcgcgatgaggtgaaa
tccaagtggagcgtgtcggatttcatcagggccttcatcaagtttcacggtcacgtctac
ctgagtaagagtctggacaaggtggacgctctgagggagaaactggaggagcagtttcag
aggctgattctgcagaaggccttcagctcccagcagctggtccacattaccgtcatcaac
ctgtttgagctccaccacctcagagacctgacggccgacggcggcgagcagagctacagc
agcgagcagcagatcagctggttccagctgctcggcctcttcatgtccttcctgggtgtg
atgtgcagccgcgtcctgctcaacaagaaccggggggaggagatcatgggggagtgtccc
ctgccggccatcaaggtgtctctggactggctcaaactgagacccagcgtcttccacgag
gccgccgtcgacaagaggcagcatatctggccctggctggtgtccatcctcaacagtttc
cagcccaaagaggacgacgtgtcctgttcatcagtgacgcccctgccagaggagtttgag
ctgcagggtttcttggctctccggcccgctctgaggtgtctggacttcaccaaaggacac
cagggcatcctggtggacagggacggcctgccggtgcacgcccgacaccagagactcatc
agtctgggcaaatgggtggcggacaaccagccggggctgatccagtgccgcgtgagcgag
gacggcctgctcgtcttcatcaccgacattcccgagcaggccatcgtggagccgcaggag
aaggaggtgccggtgctgcaggagtcgtccaacggcgagcagacggccaacgacggcggc
aacgcgggcctgaagtcggtgctgtcggcggggaagacgcagagctcgtggcccgacggc
ggcgaccggcccgtcgtcaccttcaaggagaacatcaaacccagagagcagagccgcgag
cccacgcggaaccaccaccagaaagacgtcggcaaggagcgccgggacttctgcaagggc
aacggggccgccgggaagggagacctgaagcgggacggcaagaggaagagcgagctgaag
aagacgggtcacgagaagacggccgacgccggaaagctggtgaaggcgcagacggagttg
aggaagactccggtgtccgaggcgaagaagactcccgtcactcaagctcaaaccacctgc
tcgtctcagttcatccccatccatcaccccggagccttcccaccgctgcccagcaggcct
ggcttccccccctcagcctacgtgatcccgccccaggtggggttcccggggctgcaggtg
aatccgggcttcaccttctccaccggggtgtccgtccccggacctttcctccagccgacc
gtccacacgcaggcgggcgggcaggtccaggcggggaagcagtcccacattccctacagc
cagcagaggccgtcggggccggggccctcgggtcaggggcctatgagccagggcccctcc
caaggtcagccgccgcagggccaggcgccttcccagcaggccttgcaacagtcggtgcag
ctgcaggtccaggcgatgagtcagcagcagcagtcgcccaccaaaccggtgcagcaggtc
gggatggggaagagtccaccgcaccacccgggactgcagcagtacatgcaggagcagccg
gctcagatgtggaaccaggcgcaggcggcgctgcagaagctctctcccatgcagatatcc
atgaaacagccgcagcagcagcagcagcagcaggccttctacatggcggctcaggatccc
atgaagatgtacgagcaccagctgcagccgcccgctcagccgcagcaccccaacatggat
aagaagatgaagtaccccgacgtcaagatgcaggacttctactgggagccctcgtacagg
atgggcgacggcctggccgtgatggccgacaggatgaagaggcctccgccgggcggcatc
tgtccggagcaggaggtccccgccgggccccggggacccccttttgaggacaacaagagc
tcgcctcttctacctcccgacctgttaaaaactctagcagattttgaggaggaggaggag
ctcgtctttactaagcctcctgatttcttccaggccctggctggccctcttagcactgct
cctggaccaaatatatttctgccaaaccagaccaggatggagagcggccccgaggtcggc
ggccagtcgtcttctctgctgcccatgtctggcttcccgatgcaggagtacaaccagaac
agcatcttcagtcaggcctacggcaagaacctgccgcccagctccaagcccgacgctccc
atggtgcaccaggagccgtcgctctactcgctgttcgaagggaccccgtggtccccgtcc
ctccccgccagctcagaccactccaccccggccagccaatcccctcactcctccaacccc
agcagcctgccgtcctccccgccgacgcacaaccacggagccatgcccttctctaacttc
gggcccatcggcactccggacagccgggaccgcagggtggtggaccgctggaaggccgac
aagaccggagcggtcagcggcttcggcctcgactacctgccggccgccgcctcctccgcg
gcttcggacaacagctggcaccaggccggaccgaccggcagctcctggaccaatcaggag
tctccgatggaggagtcgtcctccaccgtgctgctcgacagcttcaagtcgatctggtcg
agctccatgatgcagcccggcccgtcggcgctggagcagctcctcctgcagcagaagcag
aagcagcagcggggtcacggcaccatgaacccgcctcactga
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integrated database retrieval system
