Brachyistius frenatus (kelp perch): 138635268
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Entry
138635268 CDS
T10614
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre04382
Cornified envelope formation
bfre04510
Focal adhesion
bfre04512
ECM-receptor interaction
bfre04518
Integrin signaling
bfre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138635268 (col4a4)
04518 Integrin signaling
138635268 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138635268 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138635268 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138635268 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfre04147
]
138635268 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
bfre00536
]
138635268 (col4a4)
Exosome [BR:
bfre04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138635268 (col4a4)
Glycosaminoglycan binding proteins [BR:
bfre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138635268 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138635268
NCBI-ProteinID:
XP_069578766
LinkDB
All DBs
Position
Unknown
AA seq
1689 aa
AA seq
DB search
MSTKHQQTGQTTFTSMVSLPESCPRPPPDTEWVHMVECPGEDMGDLTEPCGGRDCSTCQC
FPAKGAMGSPGSLGQQGPQGPPGFPGPQGPPGEKGQKGVEGLTGAPGLKGDSGVAGVPGF
PGLEGVPGHPGPAGGPGFPGLDGCNGTRGQRGETGLPGAQGPDGEPGFPGLKGFPGDLAI
NFIQYPGVPGDAGPGGLPGLQGEQGFPGPIGALGPAGLDGTNGFPGLPGSRGPPGEKGRS
LPGQKGDEGDQGLQGPPGPFEYVDPPEDLYIKGEEGPQGNKGVCGAQGLPGLDALPGIKG
EKGIVGFPGPRGFLGVPGLLGEEGFKGIRGSPGLPGLIGREGPKGMMGDPGPKGLPQDEE
VIHIGVVGDPGDLGLRGPPGDMGVMGIHGTPGALGRSIPGPAGVLGQRGVPGSNGDKGDP
GQTYTDGPTPGEPGKPGRPGPRGPRGEPGIPGRYCLPGVPGQPGDTGAQGPPGAQGFPGF
KGGSGDCSCGPPVDLRGLRGPRGEMGPPGFPGAPGAPGLRGERGSPGNTGESGEQGPVGF
RGVTGFKGQKGEFTVVDIKGEKGNRGQPGPPGRQGFSGRRGLDGFPGTSGNPGPPGQSSL
SPPGDTGPTGASGPKGLSGPSGPPGPSVVGVVGQQGLPGDPGSAGFPGFPGPKGVKGDTL
PCVPRNPGAPGEKGDTGSTGYTGLPGPPGFRGITGPDGSKGDKGQYGLPGPSGRLGPQGF
VGDIGDEGREGFSYGGDPGSPGLPGSPGLQGPAGNSDVGPAGPIGFPGPLGSPGPKGVPG
PPGTDGQAGILGLPGDPGAKGQRGEDGAPGVIGPPGSSSDQCDAGKPGPRGHFGPQGPIG
PPGFLGEKGELGVEGPPGFGPRGPLGKPGSPGFPGYRGPPGPSGPEADSGLPGPSGQKGV
IGARGQDGGPGALGRTGAPGALGRTGERGFNGRDGAPGCEGPKGEKGCKGAAGPPGDTNF
VPIKGETGQPGATGFNGFPGPRGQSKITTPQEVKVRKELQVSRDTLASMDSQVLQDLWDT
QDPTENQDLQDRLDVSGLRDSLASPERPETRVTQDVRGNRESPVAQDVRDPKVIKETLPG
FLAHLEIRAFLETLGTQELLDPEEILEDQVSLVLLDKKDVKGTQVSVETQVNQVLKLHHV
MRSQVSLSPPGVVGPPGPRGRGGLPGLPGKAGADGPQGPQGCSGLQGPPGPLGLHGLDGL
KGVKGDMGTRGLGVAGPTGCKGLPGDKGPPGPPGPRGLSQPGPPGSRGPPGSKGPPGASG
PPGDPGVDCIGPTLGPDGDPGLVGPDGEPGCAGVVGDPGPNPPTPGDDGDNGDAGCRGPP
GQKGASGLTGLPGIPGGPGLRGCAGPSSPPGLKGSAGPVGPKGEKGRVFPCPTLPPAPTG
SPGPPGPPGQAGDAGLPGEFGETGPKGKKGDPGCEGPIGSEGSPGPDGDRGYPGVQGEIG
VVGDKGEQGPIGDYGPPGPTQNLNSGFLLVIHSQSKKVPTCPLNMKVVWEGYSLLYLEGQ
EKAHTQDLGQAGSCMRIFSTMPFSSCNMGTCSYASRNDKSYWLSTTAAVPSIPVDGASIE
DHISRCVVCEAPSSPVALHSQTSNQPDCPPSWTSLWTGYSFLMHTGAGDEGGGQSLTSSG
SCLTDFRAQPFMECQGPRGTCHYFANIYSFWLTRVEATSSASNSSSTTLTSSWQQRENIG
RCNVCMRGE
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgtccactaaacaccagcagactggacagaccaccttcacctctatggtgtccctgcca
gagtcctgtccccgtcctccaccagacaccgagtgggttcacatggttgagtgtcctggt
gaggatatgggcgacctgacagagccctgcggcgggcgggactgctccacctgtcagtgt
tttccagccaagggagcaatgggttctccgggttctctaggtcagcagggacctcagggt
ccaccgggcttcccgggccctcagggacctccaggagagaagggccagaaaggagtcgaa
gggctgactggagctccaggactgaaaggagactcgggagtcgccggcgttcctggtttt
ccaggtttggagggagtgccgggtcacccaggacctgctggaggtcccggttttccaggt
ctggacggatgtaacggaaccagaggacagcgaggagaaactgggcttcctggagcacaa
gggcccgatggagaaccgggttttccaggactgaagggatttccaggagatctggcgatc
aacttcatccagtaccccggagtacctggagatgccgggcccggtggactgcctggtctg
cagggtgaacaggggtttccaggcccgataggagctctgggtccggcaggactggacgga
accaacgggttccccggtctgcctggttctcgaggtccacctggagaaaaaggtcgatcg
cttcccggacagaaaggagacgagggggatcagggcctccaggggcctccggggccgttt
gagtatgttgaccctccagaggacctgtacatcaaaggagaggagggccctcaagggaat
aaaggagtctgtggagctcagggactgccgggtctggatgcgctgcccgggatcaaagga
gagaaggggattgtgggatttcctggacccaggggttttttgggagtccccggtctgctc
ggagaggaagggttcaaggggatccgaggaagcccgggtctcccaggactgatcggacga
gaaggtccgaagggcatgatgggagatccaggtcctaaaggccttcctcaggacgaagag
gtcatacacatcggtgtcgtcggggaccccggggatctcggactgagaggccctccagga
gacatgggggtgatgggaatacacggaaccccaggagccctcggcagatcaatacctggg
ccggctggtgttctgggtcagagaggagttccaggatccaatggggacaaaggagatcca
ggacagacatatacagatgggcccacaccgggagaacctggaaaaccaggacgtcctgga
cccagagggccaagaggagagccgggtattccaggcagatactgtcttcccggggtccca
ggacagcctggagatacaggtgcacaggggcccccaggggctcagggcttcccagggttc
aaaggtggcagcggcgactgttcttgtggtcccccggtcgatctgaggggcctccgtggt
cccaggggtgaaatggggcctccagggttccccggagctccgggggccccgggcctgaga
ggagagagaggttcacctggaaacacaggagagagcggagaacagggtccggttggtttt
cgaggcgtcacagggttcaaaggtcagaagggagagttcacagtggtggatattaaaggt
gagaagggaaaccggggccagccgggccctccagggagacaaggattctcagggaggaga
ggactcgacgggttcccggggacctcaggaaaccccggccctccggggcagagttccctc
agccctcctggggacacaggccccacaggagcctcagggccaaagggactctcgggacct
tcaggtccaccaggaccaagtgtagtgggagtggtgggacagcagggactccctggggac
ccgggatctgcagggttccctggcttcccggggccgaagggagtcaaaggtgacactctg
ccctgcgtaccccgaaaccccggggcccctggagagaagggagacaccgggagtacaggt
tacacaggtcttccaggtcctccaggttttcgtggcatcactggaccagatggatctaaa
ggagacaaaggacagtacggacttcctggaccatctgggagactaggacctcaaggtttt
gtaggagacatcggagacgaaggacgtgaaggcttcagttacggtggagatccaggctct
ccagggctcccaggttctcctggactccagggaccagcagggaactctgatgtcgggccg
gcaggacctatcggcttcccggggcctctgggctctccgggacctaaaggagtcccgggg
ccccccggcacagatggacaagcaggtatcctgggtctgcctggagaccccggagcaaag
ggtcagagaggagaggatggggccccgggagttatcggcccccccggatcctcatctgac
cagtgtgatgcaggaaaacctggtccaaggggccactttggcccccagggacccattggt
cccccaggctttctgggggagaaaggagagctcggggtcgagggccctccaggttttggt
cctcgagggcctctcggtaaaccgggctctccaggttttcctgggtaccgcgggcctccg
ggcccctctggccccgaagcggactcaggcctgccagggcccagtggtcagaaaggtgtg
atcggggcccggggccaggacggagggccaggggccctgggacggactggggcccctgga
gccttgggaaggaccggggagagagggtttaatggacgagacggagctccaggatgtgaa
gggccgaaaggagagaaaggctgtaaaggcgccgcagggcctccaggagacaccaacttt
gtccccatcaaaggagagacaggacaaccaggagccactggattcaacggattccctgga
ccacgaggtcagagcaaaatcacgacaccacaggaagtaaaggtgcgcaaggagctacag
gtaagccgggataccctggcatcaatggactcccaggtattgcaggacctctgggacacc
caggatcctacggagaaccaggacctccaggaccgactggacgtatcgggcctccgggat
tcattggcttccccggagagaccggagaccagggtgacccaggatgtccgggggaaccgg
gagagtccggtcgcccaggatgtccgggacccaaaggtgataaaggagactctaccaggg
tttctggcccacctggagataagggccttcctggagactttgggcactcaggagcttctg
gaccccgaggagatcctggaggaccaggtttccttggttctgctggacaaaaaggatgta
aaggggacccaggtttccgtggagacccaggtgaatcaggtactgaagctgcaccacgtc
atgagatcacaagtgtctctgtctccaccaggtgtggtcggaccgcccggtcccagaggt
cgtggaggtcttccaggtcttcctggtaaagcgggcgccgacggtccgcagggtccgcag
ggctgctcgggactccaaggtcctcctggaccgctgggacttcacggactggacggactg
aaaggagtgaagggggacatggggaccagaggtctgggtgtcgcaggtcctacaggctgc
aaaggtcttccaggagataagggtcctccaggtcccccaggtcctcgtgggttgtcccag
cctggtccacccggttccagaggccccccgggatccaaaggacctccaggtgcttctgga
cctccaggtgatcctggagtcgactgtataggtccaaccctgggaccagatggagatcct
ggtcttgttggtccagatggagagccagggtgtgccggtgtcgtgggggatccgggtcca
aaccctccgactcctggggacgatggggacaacggggacgcagggtgccggggcccaccg
ggacaaaaaggagcttcagggttgacaggactgccgggcatccctggaggtccaggactg
agaggttgtgccggtcccagtagtcctccaggactgaaggggtcagcaggaccggtgggt
ccaaagggggagaaagggcgagtgttcccttgccccacgttacctccagcaccaacaggc
tccccaggaccacctggaccccctggtcaggctggagatgcaggtctgccgggagaattt
ggtgaaactgggcctaaaggtaagaagggggatcccggatgtgagggaccaatcggttct
gaggggtccccaggtccagatggagacagaggatatcccggcgtgcagggggagattgga
gtcgtgggggacaaaggtgaacaaggtccaattggtgactacggtcctcctggaccaacc
caaaacctgaactcaggcttcctgttggtgatacacagccagtcgaagaaggttcccacc
tgtcccctgaacatgaaggtggtgtgggagggctacagtctgctgtacctggagggtcag
gagaaggcccacactcaggacctgggtcaggccggctcgtgtatgcgcatcttctccacc
atgccgttctcctcctgcaacatgggaacctgctcgtacgccagccgcaacgataagtcc
tactggctgtccacgacggcggcggttcccagcatacccgtggacggagcctccatcgag
gaccacatcagccgctgcgtggtctgtgaagccccctcgtcaccggtcgccctgcacagc
cagacctccaaccagcccgactgcccccccagctggaccagcctgtggaccggatactcc
ttcctcatgcatacaggtgcgggggacgagggcggcggccagtctctgacatcatcaggc
agctgtctgacggacttcagggcccagcccttcatggagtgtcaggggccgcgaggaact
tgccactacttcgccaacatctacagcttctggctgacccgggtggaggcgacaagctcc
gcctccaacagctcctccaccacgctgaccagcagctggcagcagagggagaacatcggg
aggtgcaacgtctgcatgaggggagagtga
DBGET
integrated database retrieval system
