| Entry |
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| Symbol |
mtrex
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| Name |
(RefSeq) exosome RNA helicase MTR4
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| KO |
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| Organism |
bfre Brachyistius frenatus (kelp perch)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:bfre00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138635488 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:bfre03019]
138635488 (mtrex)
03041 Spliceosome [BR:bfre03041]
138635488 (mtrex)
03009 Ribosome biogenesis [BR:bfre03009]
138635488 (mtrex)
03016 Transfer RNA biogenesis [BR:bfre03016]
138635488 (mtrex)
Enzymes [BR:bfre01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138635488 (mtrex)
Messenger RNA biogenesis [BR:bfre03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
138635488 (mtrex)
Spliceosome [BR:bfre03041]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138635488 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
138635488 (mtrex)
Ribosome biogenesis [BR:bfre03009]
Eukaryotic type
Pre-60S particles
Helicases
138635488 (mtrex)
Transfer RNA biogenesis [BR:bfre03016]
Eukaryotic type
tRNA degradation factors
TRAMP complex
138635488 (mtrex)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
1035 aa
MADAFGDGLFSVFDDEQQTTTSKKIPACAPTDTGKAAGKNGTDKEPDLCARAKREADSDG
GEEVVFGKRPRLEAVSANDLNLAEFMPQVKVEQVETVEGCSHEVALQANDEYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDTGGSGGGKWDPRGRK
GTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDEEKRLVEEVFNN
AVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMADEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIK
KLEEQYHTIEIPNEEGVVTYFKIRQQLAKLGKEIQEFVHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFCKKSNVKASTDSEPLYVVEVLVHCSKDSVKDAATEAAKPATPGETGEMQ
VVPVMLHLLTAISSVRLYIPKDLRSFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKAQIAADVRTAKRELKKARTVLQ
MDKLKCRKRVLRRLGFASPSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTVEQATA
LLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLM
DVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL |
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| NT seq |
3108 nt +upstreamnt +downstreamnt
atggcggacgcctttggagacgggttgttcagcgtgtttgacgatgaacagcaaactact
acgagcaaaaaaatacccgcgtgtgcgcctacagacacggggaaagctgcgggtaaaaat
ggcaccgacaaggagcccgacctgtgtgcccgggccaagagggaggcggacagtgacgga
ggggaggaggtggtgtttgggaagagacctcgacttgaggcagtctcagctaacgaccta
aaccttgcagaatttatgcctcaagtgaaggtggagcaagtcgaaactgtggaaggatgc
tcacatgaggtcgctctgcaagcaaatgatgaatataaaccactgaaacctcgagtgggg
aaagcagccaaggagtacccctttattctcgatcccttccagcgtgaggccatcttatgt
attgacaacaatcagtctgtacttgtgtctgcacacacctctgctggcaagactgtttgt
gctgagtatgccattgcactggctctcagagagaagcagcgagtgatcttcaccagcccc
atcaaggccctctccaaccagaagtacagagagatgtacgaagagttccaggatgtggga
ctgatgaccggtgatgtcaccatcaaccccaccgcttcctgcctcgtcatgacgacagag
atcttgaggagcatgctgtaccggggctcggagatcatgagggaagtagcgtgggtcgtc
tttgacgagatccactacatgagagacgcagagcgtggtgtggtgtgggaggagaccatc
attcttcttcctgacaatgtgcattacgtcttcctgtcagccaccatccccaatgccaaa
cagtttgccgagtggatttgccacttacataagcagccatgccatgtggtctacacagac
taccgccccactccgctgcaacactacatctttccagcagggggtgatggactccacctg
gtggttgatgagaatggagatttcagagaagacaatttcaacacagccatgcaggtgctg
agagatgctggcgatactgggggcagtggaggtggcaagtgggacccaagaggacggaaa
gggactaaaggtccatccagtgtgttcaagatagtgaagatgatcatggagaggaacttc
cagcctgtcatcattttcagcttcagcaagaaggagtgcgaggcctacgctctgcaggtg
gccaaactggactttaacacggatgaagagaaacgtctcgtggaggaagtgttcaacaac
gcagtggactgtctctccgatgaagacaagaaactgcctcaagtcgaacatgtgctgccg
ctgttgaagagggggataggaatccatcacggaggcctcctgcccatcctgaaagagacc
atagagatccttttctctgaaggcctgctcaaggccctgtttgctacagagacattcgcc
atgggcatcaacatgccggctcggaccgtgctcttcaccagtgcacgcaagtttgatggc
aagagtcaccgctttattacttcgggtgagtacatccagatgtctgggcgtgctgggagg
agaggaatggatgacagaggaatcgttattttcatggcggacgagaagatgagtccagct
gtgggcaaacagctcctcaagggctcagccgacccgttgaacagtgccttccacctgacc
tacaacatggtgctcaacctgctgcgcgtggaggagatcaacccagaatacatgctggag
aaatctttctaccagttccaacactacagggctttacctggtgtagtggagaaaattaag
aagttggaggagcagtaccacaccatcgagatccccaacgaagagggcgtggtcacttac
tttaaaatccggcagcagctggccaaactggggaaagagatacaagagttcgtccacaaa
cccaaatactgcttgcccttcctgcagcccggacgactggtcaaggtgaagaatgaagac
gccgacttcggctggggagttgttgtaaacttttgcaagaaatcgaacgtgaaggccagt
acagactcggagccactgtatgtggtggaggttttggtccactgtagtaaggacagcgtg
aaagacgccgcgacggaggctgctaaacctgccactccgggagagactggagagatgcag
gtggttcctgtgatgctccacctcctcaccgccatcagctcagttcgtctctacattccc
aaagacctgaggtcctttgacaacaggcagctcatgctcaagtccatacaggaggtgcag
aaacgcttcccggacggggttcctctgctcgaccccatagatgacatgggcatcaaagac
cctgcactgaagaaggttattcagaaggtggaggccttcgagcaccgcatgtactcccac
ccgctacacagtgaccccaacttggagtctgtctactcgctctgtgagaagaaagctcag
atcgcagcagacgttcgaacagccaaacgagagctgaagaaagctcggaccgtcttgcag
atggacaagctgaagtgcagaaagagagttctacgaagactcggcttcgccagtccctct
gatgttatcgaggtgaaagggcgggttgcctgtgaaattagcagtgccgacgagctcttg
ctgacggagatggtgttcaacggtctcttcaacgacctgacggtggaacaagccaccgcc
ctgctgtcctgctttgtcttccaggagaatgccagtgagatgccaaaactaaccgaacag
ctcgctgcaccgctgagacaaatgcaggaatgtgcaaagcgcattgccaaggtgtctgca
gacgccaagctggaggtggacgaggagacgtatctgaaccagttcaaaccccacctgatg
gacgtggtgtacgcctgggccaacggagccacgttcgctcagatctgcaagatgaccgac
gtctttgaagggagcatcatccgctgcatgcgccgtctggaggaagtgctgcgacaaatg
tgttctgcagccaaagccatcggcaacactgagctggagaacaagttcgctgaaggaata
acaaagatcaagagagacatcgtctttgctgccagtctctacttatag |
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