Brachyistius frenatus (kelp perch): 138635596
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Entry
138635596 CDS
T10614
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
bfre Brachyistius frenatus (kelp perch)
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfre03021
]
138635596 (chd1)
03036 Chromosome and associated proteins [BR:
bfre03036
]
138635596 (chd1)
Transcription machinery [BR:
bfre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
138635596 (chd1)
Chromosome and associated proteins [BR:
bfre03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
138635596 (chd1)
SLIK complex
138635596 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
138635596
NCBI-ProteinID:
XP_069579244
LinkDB
All DBs
Position
Unknown
AA seq
1797 aa
AA seq
DB search
MAARSEDESVSNSSGESSNSDDESGSGSGSGSGSGSSSSSSSSSSQSGSSDSGSGSDSGS
QSDSDAAKSKEKMDPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQRQSSSNSG
SDEDSSSSDESDSSSGSKRRRNSGSSDSGSGSGSGSGSGSDSSAEDNSDETASDYEPSHK
IKSRKPPTKMNFRNGKKSSAQRKKAPKGSSSDDDDDNYKKMASAGPRRQATVNISYKEDE
DLKTDSDDLVEVLGEDVPQPEEDEFETLEKVMDSRIGRKRAVGSVTTVYTIEADGDPNAN
FNPNKEAGDVQYLIKWKNWAHIHNTWETEETLKLQNVKGMKKLDNFKKKDQEKKRWLKAA
SPEDVEYFNCQEELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDG
ALIGKKFQKCIDCYMSRNQSKAIPFRECKVLKQRPRFVPMKKQPTYIGGDGLELRDYQLD
SLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFNEHQLYGPFLLVVPLSTLTSWQR
EIHLWAPQMNVVVYLGDISSRNMIRTHEWMHVHNKRLKLNILLTTYEILLKDKSFLGGVS
WAFIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHS
WEIFEEDHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYK
WILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKLPEDEFLNRAEALQQLIRSSG
KLVLLDKLLLRLKERGHRVLIFSQMVRMLDILADYLRSRQFLFQRLDGSIKGEMRKQALD
HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVN
IYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFNKEELSAI
LKFGAEELFKEPEGEEQDPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMME
EEEIDIDSERSQRSWDDIIPGEQRRRMEEEERQKELEEIYLLPRMRNCAKQISFNASEGR
QSRNRRYSGSDSDSPSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGGPLERL
DAIARDAELVDKSEHDLKRLAETVHNGCVRTLRENPCGPEKTSGGRRGKVKGPTFRISGV
QVNAKLVISHEEELAPLHKAIPADPEERKKYIIPCHSKAAHFDIDWGKEDDSSLLIGIYE
YGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQKQAG
TANSRKRKPRSKKSKTLKPAKTEEVVKSPSSDVPSDKRSDEEEELEEEEEITPVKTPSRR
SRPERVVIKEEEEEEEEDEDEEEPEQEELSSSGEREVKEKEVKKEGKKEKKEESGDIKET
KEPKEKKETKEAVHKQEESSDKNEVKPEVRDRTKKASDVPIHNTASGESVPGSEESEELD
QRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEL
IKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRGGNAHGYKHADIER
LKDNSHQDDSSRDSYSSDRHPPSARYHDNSSSSKERHGSESHRKTSAGESRKRPYSSFSN
GKDHRDRDHYRPDSRDRDRDRQDRYYNDSKHRKLEDFRSSRDHRLDMKDHSHSDHRSSYR
YHSDWQTEQRASASGPRSPRDQRSPYDSRSPLGHRSPFDYSSDHKSTPEQIWSSRKT
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacgcagcgaggacgagagcgtgagcaacagcagcggagaatccagtaattct
gacgatgaatccggttctggatcgggctcgggatccggctcaggctccagttccagctcc
tccagcagcagcagccaatcagggagcagcgactcaggaagtggctcagactccggcagc
cagtcagactctgacgcggcgaaatccaaggagaagatggatccaccaaataagtccaac
atcgacggagccgagttctggaagtcgaacccaagcatcctcgcggtgcaaagatctgct
atgctcaggaaacagcagctccagcagcagcaacagagacagagctcctccaacagtgga
tccgatgaggactcctcgagtagcgacgagtctgactcatcgagtggatccaaaaggaga
agaaattcaggctcctccgactccggatcgggttctggatctgggagcggttctggatcg
gactcatcggcggaggacaacagcgatgaaacggcgtccgactacgagcccagtcacaaa
atcaaaagcagaaagcctccaaccaagatgaactttcgtaacggaaagaaaagcagcgcg
cagaggaagaaagccccgaagggctcttcctccgacgatgacgacgataactacaagaaa
atggcgtcggcggggccgcgtcggcaggccaccgtcaacatcagctacaaggaggatgag
gacctgaagacggactcggacgacctggtggaggttctgggcgaagatgtcccgcagccc
gaggaggacgagttcgaaacactggagaaagtgatggacagcaggataggaaggaaaaga
gcagtcggaagtgtaaccactgtatacacaatagaagcagacggagaccccaacgccaac
ttcaaccccaacaaagaggccggggacgtccagtacttgataaagtggaagaactgggcc
cacatccacaacacgtgggagaccgaggagacgctcaaattacagaacgtcaagggcatg
aagaagctggacaacttcaagaagaaggatcaggagaaaaagagatggttaaaggcggct
tcaccggaggatgttgaatatttcaactgtcaggaggagctgatggacgacctgcactct
cagtaccagctggtggagcgaatcatagggcattcaaaccagaagtcggcggcgggttac
ccggactacctgtgcaagtggcagggtttaccgtactcggagtgcagctgggaggacggc
gcgctgatcggcaagaagttccagaagtgcatcgactgctacatgagcagaaaccagtcc
aaggcgattccatttagagaatgcaaggtgctgaagcagagacctcggttcgtgcccatg
aagaagcagccgacgtacatcggaggggacggcctggagctccgagactaccagctggac
agtctgaactggatggcccactcctggtgcaaaggcaacagttgcatcctcgctgatgag
atgggtttggggaaaaccatccagaccatctccttcctcaactacctgttcaacgagcac
cagctgtacgggcccttcctgctggtggtgccgctatccacgctcacctcctggcagaga
gagatccacctgtgggccccgcagatgaacgtcgtggtctatctgggagacatcagcagc
aggaacatgatcagaactcatgagtggatgcacgtccacaacaagaggctgaagctgaac
atcctcctcaccacatacgagattcttctcaaagacaagtcgttcctgggcggcgtcagc
tgggccttcatcggtgtggacgaggcgcaccggctgaagaacgacgactcccttctctac
aagaccatgatcgacttcaagtccaaccaccggctcctgatcaccgggacgccgctgcag
aactccctgaaagagctctggtccctgctgcacttcatcatgcctgagaagtttcactca
tgggagatcttcgaggaggaccacggtaaaggccgggactcgggctacaccagcctgcac
aaagagctggagccgttcctgctgcgccgcgtcaagaaggacgtggagaaatctctgccg
gccaaagtggagcagattctccgagtggagatgagcgccatccagaagcagtattacaaa
tggatcctgaccaggaactacaaggctctgagtaaaggtaccaaaggcagcacgtcgggc
ttcctgaacatcatgatggagctgaagaagtgctgtaaccactgttaccttatcaaactg
ccggaggacgagttcctcaacagggctgaagctctgcagcaactgatccgcagcagtggg
aagctggttctgctggacaaactgttgctgcgtctgaaggagagaggccaccgcgtcctg
atcttctcccagatggtgcggatgctggatatcctggccgactacctgcggagccggcag
ttcctctttcagaggttagacggctccatcaagggggagatgaggaagcaggcgctggat
cattttaacgctgaaggctccgaggacttctgcttcttgctgtctacgcgtgcgggcggt
ctgggcatcaacctggcgtcggccgacaccgtcgttatctttgactcagactggaacccc
cagaacgacctgcaggctcaggccagagcccaccggatcggccagaagagacaggtgaat
atctaccgtctggtgaccaaaggctcggtggaggaggacatcatcgagagggcgaagaag
aaaatggtgctggaccacctggtcattcagaggatggacaccacggggaaaactgtcctc
catacgggcgctgctccctccagttcagcgccgttcaacaaggaggagctgtcggccatc
ctgaagtttggtgctgaggagcttttcaaagagccggagggcgaagagcaggatcctcag
gaaatggacatcgacgagatcctgaagagagcggagacgagggagaacgaccccggaccc
tccacagtgggggaggagctcctgtctcagttcaaggtggccaacttctccatgatggag
gaagaggagatcgacatcgactctgagcgaagtcagaggagctgggacgacatcatccct
ggggagcagaggaggaggatggaggaggaggagagacagaaggagctggaggagatttac
ctgctgcctcgcatgaggaactgtgccaaacagataagctttaacgctagcgaaggccgg
cagagtaggaacaggaggtactccgggtcggacagcgactccccctcagaccggaagagg
ccaaagaaacgaggacggcctcggaccatcccgcgagaaaacatcaagggtttcagtgat
gctgagatccggaggtttgtcaagagctacaaaaagtttgggggaccgctggaaaggttg
gacgcgattgctcgggacgctgaactcgtggataagtccgaacatgacctgaaacgtttg
gcagagacggttcataacggatgtgtgaggacgctccgagaaaacccctgtggaccagag
aagacctcaggcggcagaagagggaaggtgaaaggcccgacgttcaggatctctggagtc
caggtgaacgccaagctggtcatctcccacgaagaagagctggcgccgctgcacaaggcc
attcctgccgaccccgaggagagaaagaagtatataatcccgtgccactcaaaggcagca
catttcgacattgactgggggaaggaggacgactcgagcctcctcataggaatctatgaa
tatggatatggcagctgggagatgattaagatggacccggatctcaacctgacacacaag
ctcctaccagacgaccctgacaagaagccgcaggccaagcagctgcagaccagagccgac
tacctcatcaagttactgagcaaggacctggccaagaaagaagcccagaaacaagcgggg
acggccaactcacgcaagaggaaacccaggagtaaaaagagcaaaaccctgaagcctgcc
aagaccgaagaggtggtgaagagcccgtcctcggacgtcccatcggacaagaggtccgac
gaggaggaggagctggaggaggaggaggagatcacgccggtgaagacgccgagcagacgg
agccgaccggagagggtggtgatcaaagaggaggaggaggaagaggaagaggacgaggac
gaggaggagcccgagcaggaggagctgtcttcatcgggggagcgcgaggtgaaggagaaa
gaggtgaaaaaggaagggaagaaggagaagaaggaggagagcggcgacatcaaagagacc
aaggagccgaaggagaagaaggagacgaaggaggcggtgcacaagcaggaggagagctcg
gacaagaacgaggtgaagccggaggtacgagatcggaccaagaaggcatccgacgtgccg
atccacaacacggcgagcggagagagcgtgccggggtccgaggagtccgaggagctggac
cagaggaccttcagcgtgtgtaaggagaggatgcggccggtgaaagcagccctgaagcag
ctggacaggccggagaaaggactgtcggagcgcgagcagctggaacacacccggcagtgc
ctcatcaagatcggagaccacatcaccgagtgtctgaaggagtactccaaccccgagctc
atcaaacagtggagaaaaaacttgtggatattcgtctccaagttcaccgagttcgacgcc
agaaaactccacaaactgtacaagcatgcgatcaagaagaggcaggagaacgcccaggcg
atggagcagaacaccagaggagggaacgcccacggctacaaacacgcagacatcgagagg
ctgaaggacaactcgcaccaggacgacagcagcagggacagctacagctccgacaggcat
ccgccgtcggcccgttaccacgacaacagcagcagcagcaaggagaggcacggctccgag
tcccacaggaagacctcggcgggggagtccaggaagaggccgtactcctccttcagcaac
ggcaaagaccaccgggacagagaccactacagaccggacagccgggacagagacagagac
agacaggacagatactacaacgacagcaagcacaggaagctggaggacttccgcagcagc
agagaccaccggctcgacatgaaggatcattcccattcggaccaccgctcctcctaccgc
taccactccgactggcagacggagcagcgggcctcggccagcgggccccgctccccccga
gaccagcgctccccgtacgactcgcgctcgccgctgggtcaccgctcgccgttcgactac
tcctcagaccacaagagcacaccagagcagatctggagcagccgcaagacataa
DBGET
integrated database retrieval system
