Brachyistius frenatus (kelp perch): 138636103
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Entry
138636103 CDS
T10614
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138636103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfre03021
]
138636103
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138636103
Transcription machinery [BR:
bfre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138636103
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138636103
U7-dependent histone pre-mRNA processing factors
138636103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
138636103
NCBI-ProteinID:
XP_069580048
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MAAKRKPDVVTVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDA
LPYIDLIDPAEVDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVK
VSNISADDMLYTETDLEDSMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGV
KLLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNR
EGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDK
IRKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGV
IIAGYCVEGTLAKHIMTEPDEINTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPP
HVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGTLAD
RKCIQGQRVSGILVKRDFNYHILTPSDLSDYTDLCMGTVTQAQVIPYTGPISLLVSQLRS
LAGDVEQVEGSDKITVKIFKNITLVHEAGTVQLEWIANPLNDMYADAVTTVVLEVQSNPN
AQKLMESRREPFDMEVFIERLELMLHDMFGEDCVNFKDDKNLSVTVDGATAFVDPETRSV
TCVEDESLREMVEVAIHRLYDALSPTF
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaacggaagccggatgttgtgacggttcctgcggaggagagcgaccagctg
ctcatccgcccgcttggtgccggtcaggaggtgggacgatcctgcatcatcctggagttc
aagggacgaaagatcatgttggactgtgggatccatcctggtctggaggggatggacgct
ctgccgtacatcgacctgattgatccggctgaggtcgacctgctgctcatcagccacttc
cacttggaccactgtggagcgctgccctggttcctgcagaagaccagctttaaaggacgg
accttcatgacacacgccaccaaggccatctaccgctggctgctgtccgactacgtcaaa
gtcagcaacatctcggcggacgacatgctgtacacggagacggacctggaggacagcatg
gagaagatcgagaccatcaacttccacgaggtgaaggaggtggccggcatcaagttctgg
tgctaccacgccggacacgtcctcggagccgccatgttcatgatcgagatcgccggcgtg
aagttgctgtacacgggcgacttctcccgtcaggaggaccgacatctgatggcggccgag
atccccagcgtgaaaccggacatcctcatcaccgagtcgacgtacgggacgcacatccac
gagaagcgagaggagagagaggctcgcttctgtaacaccgtccacgacatcgtgaaccgg
gagggccgctgcctgatccccgtcttcgcgctgggacgagcccaagagctgctgctcatc
ctcgacgagtactggcagaaccacccggagctccacgacatccccatctactacgcctcc
tccctggccaggaagtgcatggccgtctaccaaacctacatcaacgccatgaacgacaag
atccggaaggccatcaacatcaacaaccccttcgtcttcaagcacatcagcaacctcaag
agcatggaccacttcgacgacatcggccccagcgtggtgatggcgtctccgggtatgatg
cagagcggcctgtccagagagctgttcgagagctggtgcaccgacaagaggaacggagtc
atcatcgccgggtactgcgtggagggaacgctcgccaagcacatcatgacggagcccgac
gagataaacaccatgtcgggtcagaagcttcctctgaagatgtcggtggactacatctcg
ttctccgctcacaccgactaccagcagaccagcgagttcatcagagccctcaaacctcct
cacgtgattctggtccacggcgagcagaacgagatggcccgtctgaaggcggctctgatc
cgcgagtacgaagacaacgacgaggttcacatcgaagtccacaacccgagaaacaccgag
gccgtcacgctcaacttcagaggagagaagctggcgaaggtgatgggcaccctggccgac
aggaagtgcattcagggtcagagggtctccgggatcctcgtcaaaagagacttcaactat
cacatcctgacgccctccgacctctccgactacacagatctgtgtatgggcaccgtgacg
caggctcaggtcatcccgtacaccggaccgatctccctgctggtcagccagctgcgaagc
ctcgcaggcgacgtggagcaggtggagggaagcgacaagatcacagtgaagatctttaag
aacatcacgctggttcatgaagctggaaccgtgcagctggagtggatcgccaacccgctc
aacgacatgtacgccgacgccgtcaccacggtggtcctggaggtccagtctaaccccaac
gcccagaagctcatggagagccggagggaacccttcgacatggaggtgtttatcgagcgg
ctggaactcatgctgcacgacatgttcggggaggactgcgtgaatttcaaagacgataaa
aacctgagcgtgacggtggacggcgccacggcgttcgtcgacccggagacccggtcggtg
acgtgtgtggaggacgagtcgctgagggagatggttgaggtcgccatccatcggctctac
gacgccctcagcccgaccttctga
DBGET
integrated database retrieval system
