Brachyistius frenatus (kelp perch): 138636124
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Entry
138636124 CDS
T10614
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
138636124 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfre03400
]
138636124 (lig3)
Enzymes [BR:
bfre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138636124 (lig3)
DNA repair and recombination proteins [BR:
bfre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
138636124 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
138636124
NCBI-ProteinID:
XP_069580077
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
MQRPLSLLLHKTVCVGLQPLGLFVRCRLLKARRAFSVSSRSERAAPPHAFNFSGKIRQLS
SAPRELQHLHPPRLSPRRRFSDRADMSEQRFIVEYAKRGTAGCKKCKDKIPKGVVRIGKI
VPNPFSESAGEMKEWHHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKEIINKHVS
DLMAKVNATPKKKVQAKMNTGGQLMAPPADPSVNAPRKFSGFTAAKAGGSGSPGPSSSSS
SSSSSSPAKASQGSALSTQLCDLQHKDCLFREFRKLCAMVAEINSYNSKTQIIEKFLRKG
SGGDKFHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRCNQDDMVRDLEQGDVSET
VRMFFDESKAFPPSAKSLLTIQEVDASLTRLAQLTKEDEQQTELEDVAKKCTSNDLKCII
RLIKHDLKMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQEASNGSGPRKLLTV
EASLMTPVQPMLAEACKSVEYAMKKCPNGMYSEIKYDGERVQVHKSGDTFSYFSRSLKPV
LPHKVVHFKDYIPQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVGLF
VFDCIYFNGVSLMERPLSERRKFLHDNMVEVPNRILFSEMKHVTRAGDLAEMITRVIREG
LEGLVLKDIKGSYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLM
GCYDPASKKWCTVTKCSGGYDDAMLARLQKELDMIKISKDPSKIPGWLKIIKNYYPDFII
RDPERAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKSATNLQQLKELFRISK
ENCDFKVTAGPSASNDDRGSSGGDSGGNSPPPPASHRGAPPKKTVGGRSAAPPKPKVVKS
QPRPPGSEGPGAKKVKKTESLHSNGQTRTQSTSQPPETRNDKTLLDIFSGVKLFLPVSVQ
DFDKLRRYFVAYDGDLVSEYDAASATHTLAEPEEDGRAQKVSSRWIWECIRKRRVVAPC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgcagagacctcttagtttattacttcataagaccgtgtgtgtcggacttcaacctctc
ggactatttgtcaggtgccggctcttaaaggcgcgtcgagccttttccgtctcttcacgc
tccgaacgtgctgcacctcctcacgctttcaatttctccgggaaaatccgtcagttgtcc
tcggcaccccgtgaactccaacaccttcatcctccccggctttccccgcgccggcgtttc
tccgaccgggccgacatgtcggagcagaggttcatcgtggagtacgccaagcgcggcacc
gcggggtgcaagaagtgcaaagacaaaatcccgaagggcgtcgtgcgcatcggcaagatc
gtgccgaaccctttcagcgagtccgccggcgagatgaaggagtggcaccacgtgaagtgc
atcttcgagaagctggagagggcgagagccaccacgaagaagatcgaggacatcacggat
ctggagggctgggaggagctgcaggacgaggacaaggagatcattaataaacacgtctcg
gacctgatggccaaagttaatgcgactcccaagaagaaggtgcaggccaagatgaacacc
ggcgggcagctcatggctcctccggccgatccgtccgtcaacgcgccgcgcaagttctca
ggcttcaccgctgcgaaggctggcggctccggcagccctggaccctcctcttcctcctcc
tcctcctcttcttcctccccggccaaagccagccaaggcagcgccctgtccacccagctg
tgtgaccttcagcacaaggactgcctcttcagagagtttcgcaagctgtgtgcgatggtg
gcggagatcaacagctacaactccaagacgcagatcatcgagaagttcctgaggaagggc
tccggcggagataagttccacggagatctttacctgacggtgaagctgctgctgccgggc
gtcgtgaaaagcgtctacaacctcaacgacaagcagattgtaaaactcttcagccgcata
ttcagatgcaaccaggacgacatggtgcgcgacctggagcagggcgacgtgtctgagacg
gtgaggatgttcttcgacgagagcaaagcgttccctccgtccgccaagagcctcctgacc
atccaggaagtggacgcgtcgctgacccgcctcgcccagctgaccaaggaggacgagcag
cagacggagctggaggacgtcgccaaaaaatgcaccagtaacgacctgaagtgcatcatt
cggctgatcaaacacgacctgaagatgaactccggcgccaaacacgtattggacgccgtg
gatcccaacgcgtacgacgccttcaaggcctcgcgtaacctcggcgacgtgatcgagcgg
gtgctgaggaatcagcaggaggcgtccaacgggtcgggacccaggaagctgctcaccgtg
gaggcctcgctcatgacccccgtccagcccatgctggcggaggcttgtaaatccgtcgag
tacgccatgaagaagtgccccaacgggatgtactcggagatcaagtacgacggggagcgc
gtgcaggtccacaagagcggcgacaccttcagctacttcagccgcagcctgaagcccgtg
ctgcctcacaaagtggtccatttcaaagactacatccctcaggcgtttcccgggggccac
agtatgatcctggacgctgaagtcctcctaattgacacaaagaccagtaaaccgctgccc
ttcgggacgctcggcgtacataagaaagccgccttccaagatgccaacgtgggccttttt
gttttcgactgcatctacttcaacggcgtgagtctcatggagaggccgctgtctgaacgc
aggaagttcctccacgacaacatggtggaagtccccaacaggatcctgttctctgagatg
aagcacgtcactagagccggggatctggctgaaatgataactcgtgtcatcagagaggga
ctcgaaggcctcgtgctcaaagacataaagggctcctacgagccggggaagcgccactgg
ctgaaagtgaagaaggactacttgaacgaaggagcgatggccgacacggccgacctggtg
gtgctgggagcgttctacgggaaaggatcgaacgggggcatcatgtccagcttcctgatg
ggctgctacgacccggcctccaagaagtggtgcaccgtcaccaagtgctccggcggctac
gatgacgccatgctggcgcgcctccagaaggagctggacatgatcaaaatcagcaaggac
ccgagcaaaatccccggctggctgaaaatcatcaagaactattatccagatttcattatc
cgcgatcccgagcgagcgcccgtctgggagatcacaggcgccgagttctccaaatcagag
atgcacaccgccgacggcatctccatccgcttcccccgcatgacgcgcatccgcgatgac
aaggactggaagagcgccaccaacctgcagcagctcaaagagctgttccgcatctcgaag
gagaactgcgacttcaaagtgacggccggtccgtcggcgtccaacgacgaccgcgggtcg
tcggggggcgacagcggagggaactcgccgccgccgccggcgtcccacagaggcgctccg
cccaagaagaccgtcggcggcagaagcgccgctccgcccaaacccaaggtggtgaagtcg
cagccacgcccgcccggctcagagggccccggcgccaagaaggtgaagaagacggagagt
ctccatagcaacggacagaccagaacccaaagcacgtctcagccgccggagacgcggaac
gacaagacgctgctggacatcttcagcggcgtgaagctcttcctgcccgtctcggtgcag
gacttcgacaaactgaggcgctacttcgtggcgtacgacggcgacctggtgtcggagtac
gacgctgcctcggccacgcacacgctggccgagcccgaagaggacggccgggcccagaag
gtgtcgtcccgctggatctgggaatgtatccgcaagaggcgcgtcgtagcgccctgctag
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