Brachyistius frenatus (kelp perch): 138636130
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Entry
138636130 CDS
T10614
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03013
Nucleocytoplasmic transport
bfre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138636130 (upf2)
03015 mRNA surveillance pathway
138636130 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138636130 (upf2)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138636130 (upf2)
mRNA cycle factors
P-body specific factors
138636130 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
138636130
NCBI-ProteinID:
XP_069580090
LinkDB
All DBs
Position
Unknown
AA seq
1285 aa
AA seq
DB search
MPAERKRSINMDEKEVCTFGSKEKEKDREAERRPGSARDKAKDEAKMSGKKDGGGGKEEK
RKRLEEEKKKKEEKERKKKEEEKQKAEEEQKKKEEEEKRQQEEQERKLQEEEAKRQREEE
AALLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEEAFFSRLDSSLKKNTAFVKK
LRTLTEQQRDSLSNDFGSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFA
PLLLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGT
DRETHTHVSVVISFCKHCGDDIAGLVPRKVKLAADKFRLAFPPSEIIGTEKQQPFQNLLR
EYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLA
DLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAF
VPAILFKDNEKSGAAKDKDDGKDCKDGKDAAGSSSSAATTTEELEMELEAMDIADEPLEL
EGADEAESEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFC
MNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHI
RKKDQINIETKNKTVRFIGELAKFKMFSKTDTLQCLKMLLSDFTHHHIEMACTLLETSGR
FLFRSPESHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPPLQ
EYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEGKSYLICCMVNIWNVKYNSIHCVANLLA
GLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRT
LFSFISFGVNQDGSASPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRY
IWWKKSLDVWTKDHPFPIDIDYMITDTLELLRPKMRLSCSLEEATKQVTDLEREVLVKLG
LIMGKDGRSSAMSEGEVLDEEDDDDDEEGGAETEEQSGNESEMNEQEEDEGSENEEEERE
EEEEENTDYLTDSNKENETDEESNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRS
GETVKVHQLDVAIPLQLKSQLKKGGSGPPSIGDADADISETMQFVMLTRKGNKQQYKILN
VPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRE
RRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgcaagcgctcaataaacatggacgagaaagaagtttgcaccttcggc
agcaaggagaaggagaaggaccgcgaggcggagaggagaccgggctccgctcgggacaaa
gcaaaagacgaggccaagatgagcggaaaaaaggacggcggcggtggcaaggaggagaag
agaaagcgcctggaggaggagaagaagaagaaagaggagaaggagcggaagaagaaggaa
gaggagaagcagaaagcggaggaggagcagaagaagaaggaggaggaggagaagaggcag
caggaggagcaggagaggaagctgcaggaggaggaggccaagcggcagcgcgaggaggag
gcggctctcctcaaggagaaggaggagggccatcagctgcaccaggaggcctgggagcgc
caccagtgcaggaaggagctgcgcgtccggaaccagaacgcccacgagggtcgacccgag
gaggccttcttcagccgcctggactccagcctcaagaagaacacggccttcgtcaagaag
ctgcgcacgctcaccgagcagcagcgcgactcgctctccaacgacttcggctcgctcaac
ctcagcaagtacatcggcgaggcggtgagctccgtggtggaggccaagctgaagatctcc
gacgtgggctgcgccgtgcacctgtgctcgctcttccaccagcgctacgccgagttcgcg
ccgctgctgctgcaggcgtggaagaagcacttcgaggcgcgcaaggaggacaaggcgccc
aacgtcagcaagctgcgcaccgacctgcgcttcatcgccgagctcaccatcgtcggcctc
ttcaccgacaaggagggcctgtcgctcatctacgagcagctgaagaacatcatcggcacc
gaccgggagacgcacacgcacgtgtcggtggtgatcagcttctgcaagcactgcggcgac
gacatcgccggcctggtgccgcgcaaggtgaagctggcggccgacaagttccggctggcc
ttcccgccgagcgagatcatcggcacggagaagcagcagcccttccagaacctgctgcgc
gagtacttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacatc
gagaggcagaacagacgcatcctgcactccaaaggcgagctgagcgaggaccggcacaag
cagtacgaagagttcgccacctcctaccagaagctgctggccaacactcagtcgctggcc
gacctgctggacgagaacatgccggacctgccgcaggacaagacggtgcaggaggagcac
ggccccggcatcgacatcttcacccccggtaagcccggcgagtacgacctggagggagga
atctgggaggacgaggacgctcgcaacttctacgagaacctggtggacctgaaggcgttc
gtccccgccatcctcttcaaggacaacgagaagagcggcgcggccaaagacaaggacgac
ggcaaagactgcaaggacgggaaggacgcggccggcagcagcagcagcgccgccaccacc
accgaggagctggagatggagctggaggcgatggacatcgcagacgagccgctggagctg
gagggagcggacgaggcggagagcgaagagctggccaagaagctgctggacgagcaggaa
caagaggacgaggaggcgaacacgggctcccacctgaagctcatcgtggacgccttcatc
caacagctgcccaactgcgtgaacagagacctcatcgacaaggccgccatggacttctgc
atgaacatgaacactaagtccaacaggaggaaactggtgcgagcgctcttcaccgtcccc
aggcagcggctggatcttctccccttctactcccgcctggtggccactctgcacccttgc
atgtccgacgtggccgaggacctctgctccatgctgaagggcgacttccggtttcacatt
cggaagaaggaccagatcaacatcgagaccaaaaacaaaacggtgcgcttcataggcgag
ctggcgaagttcaagatgttctccaagacagacacgcttcagtgtctgaaaatgctgctg
tctgatttcacccaccaccacatcgagatggcctgcacgctgctggagacctccggccgc
ttcctgttcagatcgcccgaatctcacctgagaaccagcgtcctgctggaacaaatgatg
cgtaagaagcaggctcagcacctggacgcccgctacgtcaccatggtggagaacgcctac
tactactgtaacccgccgcccatggagaagacggtgaagaagaagaggccgccgctgcag
gagtacatccgcaagctgctctacaaggacctgtccaaggtgaccacggagaaggtgttg
cggcagatgcgcaagctgccgtggcaggaccccgaggggaagagctacctgatctgctgc
atggtcaacatctggaacgtcaagtacaacagcatccactgcgtggccaacctgctggcc
ggcctggtggcctaccaggaggacgtgggcatccacgtggtggacggcgtgctggaggac
atccggctgggcatggaggtcaaccagcccaagttcaaccagcggcgcatcagcagcgcc
aagttcctgggcgagctctacaactaccgcatggtggagtcggccgtcatcttccgcacc
ctcttctccttcatctccttcggggtgaaccaggacggcagcgccagccctctggaccct
ccggagcacctgttccgcatccgcctggtctgcacgctgctcgacacctgcggccagtac
ttcgaccgaggctccagcaagaggaagctggactgcttcctcatctacttccagcggtac
atctggtggaagaagagcctggacgtgtggacgaaggaccacccgttccccatcgacatc
gactacatgatcaccgacaccctggagctgctgcggcccaagatgaggctgagctgctcg
ctggaggaggcgaccaagcaggtcaccgacctggagagggaggtgctcgtcaagctgggc
ctcatcatggggaaggacggccgctccagcgccatgagcgagggggaggtcctcgacgag
gaggacgatgatgacgacgaagagggcggcgccgagaccgaggagcagtcgggcaacgag
agcgagatgaacgagcaggaggaggacgaagggtcagagaacgaagaagaggagagggag
gaagaggaagaggagaacaccgactacctgacggactccaataaagaaaacgagaccgac
gaggagagcaacgaggtcaccatccgaggaggtggactgaagcacgtcgcctgcgccgag
gacgaagacttcatccaggctctggataagatgatgctggagaacctgcagcagcgtagc
ggtgagacggtgaaggtccaccagctggacgtggccatcccgctgcagctgaagagccag
ctgaagaagggcggctcggggccgccgagcatcggcgacgccgacgccgacatctccgag
accatgcagttcgtcatgctgacgcgcaagggcaacaagcagcagtataagatcctgaac
gtgcccctgtcgtcccacctggcggcgaaccacttcaaccagcagcaggcggagcaggag
gagcgcatgaggatgaagaagctgacgctggacatcaacgagcgtcaggagcaggaggac
taccaggagatgatgcagtctctcgctcagcgtccggctccggccaacaccaaccgggag
cgccggcctcgctaccagcacccgaagggcgcccccaacgccgacctcatcttcaagacc
ggaggaaggagacgctga
DBGET
integrated database retrieval system
