Bacteroides fragilis NCTC 9343: BF9343_0103
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Entry
BF9343_0103 CDS
T00239
Symbol
polA
Name
(GenBank) putative DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
bfs
Bacteroides fragilis NCTC 9343
Pathway
bfs03030
DNA replication
bfs03410
Base excision repair
bfs03420
Nucleotide excision repair
bfs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BF9343_0103 (polA)
03410 Base excision repair
BF9343_0103 (polA)
03420 Nucleotide excision repair
BF9343_0103 (polA)
03440 Homologous recombination
BF9343_0103 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfs03032
]
BF9343_0103 (polA)
03400 DNA repair and recombination proteins [BR:
bfs03400
]
BF9343_0103 (polA)
Enzymes [BR:
bfs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BF9343_0103 (polA)
DNA replication proteins [BR:
bfs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BF9343_0103 (polA)
DNA repair and recombination proteins [BR:
bfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BF9343_0103 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BF9343_0103 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
HHH_5
DNA_pol_lambd_f
HHH
Motif
Other DBs
NCBI-ProteinID:
CAH05882
UniProt:
Q5LIZ4
LinkDB
All DBs
Position
complement(108674..111499)
Genome browser
AA seq
941 aa
AA seq
DB search
MKKLKNMNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN
PTHIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEA
DDVIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFD
IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTKV
ETNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERIFKKES
SPASPIAGTLFNQENGPVQGNLFEEFTPDHTNEEKKSNLESLNSLSYDYQLIDTEEKRNE
IIKKLLTSEILALDTETTGTDPMDAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEP
VFKNEKSLKVGQNIKYDMLVLQNYGIEVRGKLFDTMVAHYVLQPELRHNMDYLAEIYLHY
QTIHIEELIGPKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYE
IEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGE
ILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYRGLKKLLSTYIDALPQL
INPKTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYS
QIELRIMAHLSEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYG
ISVFGLAERMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPD
INSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFS
VPAKEKEIVEQVVIEEMEKAYRMHVPLKADCGWGTNWLEAH
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactgaaaaatatgaatcaaaacagcaaactattcctcttggatgcttatgct
cttatctatcgggcgtactatgcgttcattaaaaatccccgcattaattccaagggtttt
aatacttcagccatactgggattcgtcaacaccctggaagaggtgctgaagaaagagaac
cccacccacattggagttgcattcgatccaccgggacccacattccgccacgaagctttt
gaacagtacaaagctcaacgagaagaaactccggaagcaatccgtctttcggtacctatt
ataaaagatattatcaaggcttaccgaatccccatcctggaggtagcgggatatgaagcg
gacgatgtaatcggaactctggcaacagaagccggcaatcagggtatcactacttatatg
atgactcctgacaaggactatggtcagttggtaacggatcatgtatttatgtatcgcccc
aaatatggagacaaagaatttgaagttatgggggtagaacaagtaaaagctaaattcgat
attcaatcaccggcacaagtgatagatatgctcggactgatgggcgactcttccgataat
attccggggtgtccgggtgtgggagaaaaaactgcccaaaaattaattgccgagtttggg
agtatagaaaatctgcttgaacataccgatcagttgaaaggagcactgaagacaaaagtc
gagacgaatcgggaaatgattattttctccaaattcctggcaacaatcaaagtggatgta
cctatccggctcgatatgaactcactcgtccgggaacaagcagatgaggacacgttgcgt
aaaatatttgaagagctggaattccgcacactgatggaacggatattcaaaaaagaatca
tcacccgcctcccctatcgccggtacattatttaatcaggaaaacggcccggttcaaggc
aatctctttgaagaatttacgcccgatcatacgaatgaagaaaaaaaatcaaatctggaa
agcttaaattcattaagctacgactaccaattaattgatacagaggagaaaagaaacgaa
attattaaaaaactacttacatccgaaattcttgcgttagatacggaaaccaccggaacg
gatccaatggatgcagaattggttggaatgagttttagtattaccgaaaatcaggcattt
tacgttccggtacctgccgaacgggaagaggcaatcaaaatcgttcgggagttcgaacct
gtcttcaaaaacgagaagtcactcaaggtcggtcagaatataaagtacgacatgctcgtt
ctgcaaaactatgggattgaagtccgaggtaaactcttcgataccatggtagcacattat
gtcctccaacccgaactccgtcataacatggattatctggccgaaatctatctgcattat
caaaccatacatattgaagagttaatagggccaaaaggcaaagggcagaaaaatatgcgc
gacctctcccctcaagaagtttatctgtacgcctgcgaagatgcagacgttacactaaaa
cttaaaaatatactggaacaggaattaaagaaaaatgatgccgagaagttattctatgaa
atcgaaatgcctctggtccctgttcttgtcaatatcgagagcaacggagtgcgtttagat
acggaggctctgaaacaatcgtcggaacacttcactacgagactgcaaagtatcgaaaaa
gaaatttatactctcgccgaaggagaattcaacattgcatctcccaaacaggtaggagag
atactttttgataaattgaaaatagtagagaaagctaaaaaaacaaaaaccggacagtac
gtcacctcagaagaggtattggagagcttgcgaaataagcacgatattatcggtaagatt
ttggaataccggggacttaagaaactattaagtacttatatcgacgctctgccgcaattg
atcaatcccaaaaccggacgtatacacacctcctttaaccagaccgttaccgcaacagga
agattgagttcaagtaaccctaacctgcagaatatcccgatccgggacgaagacggtaaa
gagatacgcaaagcttttattccggatgatggttgcagtttcttctccgccgactattca
cagattgagctacgcataatggcacacctgagtgaagacaaaaacatgatcgatgctttc
ctcagtggctatgatattcatgcggctacagctgccaagatttataaggtagatataaaa
gaggttaccgccgatatgcgccgtaaggccaagactgccaatttcggtattatctacggt
atctccgtatttggcctggcggaacgcatgaatgtcgaccgcaaagaagccaaagagctg
atagacggttattttgaaacctatccgcaagtaaaatcctatatggacaagagtatccag
gtggcacgcgagcacggttatgtggaaacgattttccatcgcaaacgctttttaccggat
attaactcccgtaatgccgtagtacgcggatacgcagagcgaaatgccatcaatgctccg
atacagggaagcgcagctgacataatcaaagttgctatggcacgtatttatgaacgtttc
aaagcagaaggcctgaaagcaaaaatgattttgcaagtacacgatgagctgaatttcagt
gtaccggcaaaagagaaagaaatagtagagcaagtggttattgaggaaatggagaaagcc
tatcgtatgcatgttcccttaaaagcagattgcggatggggtacaaactggctggaggca
cattga
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