Bacteroides fragilis NCTC 9343: BF9343_2474
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Entry
BF9343_2474 CDS
T00239
Name
(GenBank) putative helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bfs
Bacteroides fragilis NCTC 9343
Pathway
bfs03420
Nucleotide excision repair
bfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BF9343_2474
03430 Mismatch repair
BF9343_2474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfs03400
]
BF9343_2474
Enzymes [BR:
bfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF9343_2474
DNA repair and recombination proteins [BR:
bfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BF9343_2474
MMR (mismatch excision repair)
Other MMR factors
BF9343_2474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_11
ResIII
PhoH
Motif
Other DBs
NCBI-ProteinID:
CAH08255
UniProt:
Q5LCB0
LinkDB
All DBs
Position
complement(2979834..2982194)
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AA seq
786 aa
AA seq
DB search
MPDYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFT
NKAAREMKERIARQVGEQRARFLWMGTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSL
IRSIIKEMGLDEKTYKPGSVQARISNAKNHLVSPSGYAANKEAYEGDLAAKMPAIRDIYS
RYWERCRQAGAMDFDDLLVYTYILFRDFPDVLARYREQFRYVLVDEYQDTNYAQHSIVLQ
LTKENQRVCVVGDDAQSIYSFRGADIDNILYFTKIYPDTKVFKLEQNYRSTQTIVRAANS
LIEKNERQIPKEVFSEKERGEAIGVFQAYSDVEEGDIVTNKIAQLRREHDYEYSDFAILY
RTNAQSRVFEEALRKRGMPYKIYGGLSFYQRKEIKDIIAYFRLVVNPNDEEAFKRIINYP
ARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSINKGTHTKLQDFRALIEQFMADVT
VKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEELVNGMNDFCAMRQEEGNTNVSL
IDFLSEVSLLTDQDSDKEGDGEKVTLMTVHSAKGLEFRNVFVVGMEENLFPSGMAGDSPR
AMEEERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALG
RSIDEGAGRFRREMEEGYSRRSSSERFSARPSADRPERERPKAQIIAPTVPRNLKKVSGT
MLSPSSASGAGVAGVQPGQTIEHERFGLGEVIRVEGTGDNAKATIHFRNAGDKQLLLRFA
RFKVIE
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgcccgactatatcgaagaacttaatgaaagccagcgtgcggcggtgctctacggtgat
ggcccttcgctggtcatcgccggtgccggttccggaaagacgcgtgtgctcacttataag
atagcctatctgctcgagaacggttacaatccctggaatatcctggcactgactttcact
aacaaagctgcccgtgaaatgaaggagcgtattgcccggcaggtgggcgagcagcgtgca
cgattcctttggatgggtacgttccattcggttttttcccgtattcttcgtgccgaggcg
tcccatatcggctttacgtcgcagttcaccatctacgattcggcggacagcaagagcctg
attcgttccatcatcaaagagatggggcttgatgagaagacctataagcccggcagtgtg
caggcacgcatctccaatgcgaagaaccacctggtgtctccttcgggatacgcagccaac
aaggaggcgtacgagggcgatcttgccgcaaagatgcctgccatacgggatatctacagc
cgctactgggagcgttgccggcaggccggagcaatggatttcgatgatctgctggtctat
acctatatccttttccgcgactttcctgacgtgctggcacgctatcgcgagcagttccgc
tatgtgcttgtcgacgagtatcaagacaccaactatgcacagcacagcatcgtgctgcaa
ctgacaaaggagaatcagcgtgtatgcgtggtgggcgacgacgcgcagagcatctactcc
ttcaggggagcggacattgacaatattttgtatttcaccaagatatatcccgataccaaa
gtcttcaagctggagcagaactaccgttccacccagaccattgtccgtgcggccaacagc
ctgatcgaaaagaacgagcggcagatccccaaagaggtgttctccgagaaggaacggggt
gaggccatcggggtctttcaggcttacagtgatgtggaagaaggcgacattgtgaccaat
aaaatagcgcaactgcgtcgcgagcacgattatgaatactccgacttcgccatcctttat
cgtaccaatgcccagagccgtgtcttcgaagaggctttgcgcaaacggggcatgccttat
aagatttacggcggcctctctttctatcagcgcaaggagatcaaagatatcatagcctac
ttccgcctggtggtcaaccccaatgacgaagaggcgttcaagcggattatcaattatccg
gcacgcggcatcggcgataccacggtgggcaagattattactgccgccaccgataacaat
gtcagcctctggaccgcactctgcgaacccattacgtacgggctttccatcaataaaggc
acacataccaaattgcaggattttcgtgcgctgatcgagcagtttatggcagatgtgacc
gtaaagaatgcttatgaaataggtacggaaatcatccgtcagtccggcatcatcaatgaa
gtctgccaggacaattcgcccgaaaatctcagccggaaagaaaacatcgaggaactggtg
aacggtatgaatgatttttgtgccatgcgtcaggaagaggggaacacgaacgtttctctg
atcgactttctctccgaagtatccttgctcaccgatcaggattccgacaaggagggagac
ggcgagaaggtgactctgatgacggtacattccgccaaaggactggagttccgcaacgta
ttcgtggtggggatggaagagaatcttttccccagcgggatggcgggcgattcaccccgt
gcgatggaagaggagcgacgcttgttctatgtagccatcacccgtgccgaagagcactgt
ttcctctcgtttgccaaaacccgtttccgttacggtaagatggagttcggcagccccagc
cgtttcttgcgggacatcgacacccgtttcctgcaacttccgcaggaggccgctttaggc
cggagcatcgacgaaggggccggccgcttccgccgcgagatggaagaggggtattcgcgc
cgttcgtcttccgaacgcttctctgcccgtccgtcggccgaccgtccggaacgcgaacgg
ccgaaggcgcagatcatcgcgccgacggtcccccgtaacttgaaaaaggtaagtgggact
atgctctccccatcgtcggcttccggagccggcgtcgccggcgtacagcccggacagacc
atcgagcacgaacgcttcggcctgggtgaggtgattcgcgtagaaggtacgggcgacaat
gccaaagctaccattcatttccgtaatgcaggtgataaacagctgttgctgcgtttcgcc
agatttaaagtaatagaataa
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