Bacteroides fragilis NCTC 9343: BF9343_3788
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Entry
BF9343_3788 CDS
T00239
Symbol
recQ1
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfs
Bacteroides fragilis NCTC 9343
Pathway
bfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF9343_3788 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfs03019
]
BF9343_3788 (recQ1)
03400 DNA repair and recombination proteins [BR:
bfs03400
]
BF9343_3788 (recQ1)
Enzymes [BR:
bfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF9343_3788 (recQ1)
Messenger RNA biogenesis [BR:
bfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF9343_3788 (recQ1)
DNA repair and recombination proteins [BR:
bfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BF9343_3788 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
RQC
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HHH
HTH_40
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
CAH09569
UniProt:
Q5L8L8
LinkDB
All DBs
Position
complement(4581487..4583667)
Genome browser
AA seq
726 aa
AA seq
DB search
MAGKINLTDQLKKYFGFDNFKGNQEPIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEG
TAIVISPLIALMKNQVDAMRNFSEEDGVAHFINSSLNKGAIDQVRSDILAGKTKLLYVAP
ESLTKEENVEFLRSVKISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTAT
ATPKVQHDIQKNLGMVDAHVFKSSFNRPNLYYEVRPKTQNVDKDIIKFIKNNPEKSGIIY
CLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMGIDK
PDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLEKFMQGKPVAEQEI
GKQLLLETAAYAESSVCRRKTLLHYFGEEYTEENCGNCDNCLNPKKQVEAQELLCAVIET
IIAVKENFKADYIIDVLQGRETSEVQAHLHEDLEVFGSGMGEEDKTWNAVIRQALIAGYL
SKDVENYGLLKVTDAGKKFLKHPKSFKITEDNDFEEVEEETPARGGGSCAVDPVLYSMLK
DLRKKLSKKLEVPPYVIFQDPSLEAMATIYPVTLEELQNIPGVGAGKAKRYGEEFCKLIK
RHCEENEIERPEDLRVRTVANKSKMKVAIIQAIDRKVALDDIALSKGIEFSELLDEVEAI
VYSGTKLNIDYFLDEIMDEDHMLDIYDYFKESTTDKIDDALDELGDEFTEEEVRLVRIKF
ISEMAN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaagattaatttgacagaccaactgaaaaagtatttcggatttgataatttc
aaggggaaccaggagccgatcatccagaatttgcttgatggtaatgatacctttgtgctg
atgcctaccggcggtggaaaatctctgtgctatcagttgccttctttattaatggaaggt
acggccattgttatttctccgttgattgccctgatgaagaatcaggtcgatgcgatgcgc
aacttcagtgaagaagatggtgtggctcatttcattaactcttctttgaataagggtgcg
attgatcaggtgcggtctgacattcttgccggaaaaacaaaattgctatacgttgctccc
gaatcgttgacgaaggaagaaaacgtagaatttctgcggtcagtaaagatctcgttctat
gctgtcgacgaagcgcattgtatttccgaatggggacacgacttccgcccggaatatcgc
aggatacgtccgattattaatgaaataggaaaagcgcctcttattgcgttgaccgcaacg
gccacgccgaaggtgcagcacgatattcagaagaacttgggaatggtggatgcacacgtc
ttcaagtcttcgttcaaccgtccgaatctgtattacgaggtacgtcctaaaactcagaat
gtagataaggacatcataaagttcatcaagaacaatccggaaaagtcgggcatcatttat
tgcctgagccggaagaaggtagaagagcttgctgagatacttcaagccaacgggattaac
gcccgtgcttaccatgcaggtatggattcggcaacgcgaacgcagaatcaggatgatttc
ctgatggaaaagatcgacgtaattgtagctactatcgcatttggaatggggattgataaa
cccgatgtgcgatacgtcatccactatgatataccaaagagcctggaagggtattaccag
gaaacgggccgcgccggcagagacggcggagaaggccagtgcattaccttttatacaaac
aaagacttgcagaaactcgagaagtttatgcaaggcaaacctgtggcagaacaagaaatt
ggcaagcagcttctgttggaaactgctgcgtatgctgaatcttccgtttgtcgccgtaag
acattactacattacttcggcgaagagtacacggaagaaaattgtggaaattgtgacaac
tgtttaaaccctaaaaaacaagtggaggctcaagaattattgtgtgctgtgatcgaaaca
atcatagcggtaaaagaaaactttaaggcagattatattattgatgtcctgcagggacgc
gaaacgtccgaagttcaggcgcacttacatgaagatctggaagtgttcgggtcaggaatg
ggagaagaagacaaaacctggaatgccgtgatccgtcaggcactgatagccggttatctg
agcaaggatgtcgaaaattacggattactgaaagtgaccgatgccggaaagaaattcctt
aaacatcctaagtcgttcaagataaccgaagacaatgactttgaggaagtagaagaagaa
acaccggcaagaggcggaggttcctgtgcggtcgatccggttctctattccatgctgaag
gatctccggaagaaactatcgaaaaaactggaagtgcctccttatgtgattttccaggat
ccgtctctcgaagcgatggctaccatctatccggtgacgctggaggagcttcagaacatt
cccggtgtaggcgccggaaaagccaaacgttacggcgaagagttctgcaagctgataaag
aggcattgtgaagaaaacgagattgaacgtccggaagatttgcgggtacgcacggtggcc
aataaatcgaagatgaaagtggccatcattcaagccatcgaccgtaaagtagccctggat
gatattgcgctttccaagggtattgagttcagcgaattgctcgatgaagtggaggcaatc
gtttattcgggtactaagttgaatattgattacttcctggatgagattatggacgaagac
cacatgctcgacatctatgattatttcaaggagtcgacaacagataagattgacgatgcg
ctcgacgaactcggtgacgaatttaccgaagaagaagttcgtctggttcgtatcaagttt
atctccgaaatggctaattaa
DBGET
integrated database retrieval system
