Bacteroides fragilis NCTC 9343: BF9343_4021
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Entry
BF9343_4021 CDS
T00239
Symbol
pnpA
Name
(GenBank) putative polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bfs
Bacteroides fragilis NCTC 9343
Pathway
bfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF9343_4021 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfs03019
]
BF9343_4021 (pnpA)
03016 Transfer RNA biogenesis [BR:
bfs03016
]
BF9343_4021 (pnpA)
Enzymes [BR:
bfs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BF9343_4021 (pnpA)
Messenger RNA biogenesis [BR:
bfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BF9343_4021 (pnpA)
Transfer RNA biogenesis [BR:
bfs03016
]
Prokaryotic type
tRNA degradation factors
BF9343_4021 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
RNase_II_C_S1
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
CAH09802
UniProt:
Q5L7Z7
LinkDB
All DBs
Position
4856811..4858937
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AA seq
708 aa
AA seq
DB search
MINPIVKTIELGDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL
QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS
ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEQADMDIMV
AATYENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGKTVKREYCHEEN
DEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALIDRY
YHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTL
GTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKRMIP
EDYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGEEKYA
VLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMHILGK
IEETISEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEIDNVG
RIEISGTNKKSIDDAIRLIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLLHISE
IDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPEKK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgattaacccaattgttaagacgatcgagttgggagatggcagaaccatcacactcgaa
acgggaaagctggcaaaacaggcagatggttctgtgatgcttcgcatgggaaacaccatg
ttgttagctactgtttgtgccgctaaagatgcagttcccggaacagatttcatgccgctt
caggtagagtataaagaaaaattcgcagcattcggccgctttcctggtggttttacaaaa
agagaaggaagagcatctgattatgagatccttacttgccgtttagtagaccgtgctctc
cgtcctttattccccgataactatcacgcagaagtttacgtaaacatcatccttttctca
gcagacggtgtagatatgcctgatgcattggccggattggctgcttccgcagcactggct
gtttcagatattcctttcaacggaccaatttcagaagtacgtgttgcgcgtatcgatggt
aaattcgttatcaacccgactttcgatcagcttgaacaagctgatatggatatcatggtt
gccgctacttatgaaaacatcatgatggtagaaggtgaaatgagcgaagtgtcggaagcc
gaactactggaagcaatgaaagtagctcacgaagccatcaaagtacattgcaaagcacag
atggaactgactgaaatggttggtaagactgttaaacgcgaatattgtcacgaagaaaac
gacgaagaactccgtaaagccgttcatgatgcctgctatgataaatcatatgctatcgca
gcttccggcaacagaaacaaacatgaacgccaggatgctttcgatgcaatccgcgacgaa
ttcaaagcacagttctcggaagaagaactggaagaaaaaggtgctctgatcgatcgttat
tatcatgacgtagagaaagaagcgatgcgccgttgtattcttgatgaaggaaagcgtctg
gacggacgtaaaacaactgaaatccgcccgatttggtgcgaagtaggctacctgcccgga
cctcacggatcggctatctttactcgtggtgaaactcaatcattgacttcagtgactctg
ggtactaaactggatgagaaaatcatcgacgatgttctcgctcacggaaaagaacgcttc
ctattacactataactttcctcctttctctacaggagaggctaaggctcaacgtggtgta
ggacgtcgtgaaatcggacatggaaatctggctcacagagcattgaaaagaatgattccg
gaagactatccttatgtagtacgtgtcgtttcagatatccttgaatcaaacggttcttca
tcgatggctaccgtatgtgccggaactttggccctgatggatgccggtgtgaaaattaaa
aaacctgtatcgggtatcgctatgggattgattaaaaacgcaggtgaagaaaaatatgca
gtgttgtctgacatccttggagacgaagaccacttgggcgatatggacttcaaagtgaca
ggtactaaagacggtatcacagctacccagatggatattaaggtagacggtctgtcttac
gaaatcctggaacgcgccttaaatcaggcaaaagaaggacgtatgcacatactcggtaaa
atagaagaaacaatttccgaaccacgtactgagctgaaagatcacgctcctcgtatcgaa
acaatgactattccgaaagaattcatcggtgctgtaatcggcccgggcggaaaaatcatt
cagggaatgcaggaagaaacaggtgcaacaatcactatcgaagaaatcgacaacgtaggt
cgcatcgagatctcaggaactaacaagaaatcgattgatgacgcaatccgcttgattaaa
ggtatcgttgctgttcccgaagtaggtgaggtatacaaaggtaaagttcgctctatcatg
ccttacggtgcatttgttgaattccttccgggaaaagacggtttactccatatctctgaa
attgactggaaacgtcttgagactgtagaagaagccggcattaaagagggtgacgagatc
gaagtgaaattgatcgatattgacccgaagacaggtaaattcaaactttcaagaaaagtt
ttattgccacgtccggaaaagaaataa
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