Botrytis cinerea (Gray mold): BCIN_01g10050
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Entry
BCIN_01g10050 CDS
T01072
Symbol
Bcspt5
Name
(RefSeq) Bcspt5
KO
K15172
transcription elongation factor SPT5
Organism
bfu
Botrytis cinerea (Gray mold)
Pathway
bfu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
BCIN_01g10050 (Bcspt5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfu03021
]
BCIN_01g10050 (Bcspt5)
03019 Messenger RNA biogenesis [BR:
bfu03019
]
BCIN_01g10050 (Bcspt5)
Transcription machinery [BR:
bfu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
BCIN_01g10050 (Bcspt5)
RNA polymerase I system
BCIN_01g10050 (Bcspt5)
Messenger RNA biogenesis [BR:
bfu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
BCIN_01g10050 (Bcspt5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5_N
Spt5-NGN
CTD
KOW
Cornifin
DUF3912
Motif
Other DBs
NCBI-GeneID:
5437120
NCBI-ProteinID:
XP_024546649
LinkDB
All DBs
Position
1:complement(join(3512520..3513160,3513207..3515472,3515554..3515892))
Genome browser
AA seq
1081 aa
AA seq
DB search
MSTSNLLNNSFDESDEEDDNFNPQPADLSDNEDEGHNTTSAQRQNESSRHQVGDEDGSDD
EAAPSNGRKHGSGGADDDDDDEDDEGEGEDIGGGANDDDDEEEEEEDDEEEITGHRRKRR
RDRRNVFLDVEAEVDEDEDENEDDEDELNEMNHTFIADTHPDDMADLPDGGETDDRRHRD
LDRRREMEASLDAEKQAEILRQRYANKGRSSRGTGDSAVVPKRLLLPSVDDPSIWAVRCK
EGKEREAVFSIMKRIEERAGTKEELAITCAFERGGTQSTMKGFIYVEAQRQADILTAMDG
LMNVYPRTKMMLVEIKEMPDLLRVTKSPTVEVGAYVRLRRPVKYAGDLAQVLEVTDTGLE
LRVRYVPRLDYGLHEDTSVGADGKRKRPVAGPRPPQRLFSEAEAKKRHAKHLQGRPDTKT
WNYFNEEYINGYCEKEVKIQALITKDVNPTLEEVTRFASGAEDGTENLDLNALAASLKAS
TANASYLPGDVIEVYEGEQKGVVGKAVSVTGDIVTMAVSEGALRGQTIEIPIKGLRKRFR
EGDHVKVIGGSRFRDEVGMVVKIIEDRVTLLSDQNNNEITVFSKDLREASDSGGSGALGK
YELWDLVQLDPSTVACIIKVDRESLVVLDQNGSNRTVIPSQISNKLEKRRNAVATDRNGA
EIKMEDTVKEFGGEARSGRILHIHRAYLFLKSSELSENAGIFVARTTSVQSVSAKGGRIT
ENASSPDLNSMNPAMKLNPKNNGQMLPPKSFGRDKSIGQTVTIRKGPYKGLLGIVKDTTD
TNARVELHTKSKVISVPKDCLGFKDKISGASVDPNGFRGGPGGGRGGGAPRGRGGFGGAT
PGPGWDSGAGGRTPMPGGLPERTPAWGRTPHGGAQGGRTPAWKSGSTDGGRTPGWSNDGS
RTVYAANDGSRTAYGGGNRTPAWSSGAKTPAYGLSDNYGSKTPAYGGSGNSGDAWGSKTP
AYQPNNANDNWNSGQSNNNNWGTAYDAPTPGGPLSAPTPAAMNAPTPGGYSAPTPAAMNA
PTPGAYSAPTPAPGYWGAPTPQAMDAPTPGPGYYAGAPTPGAYAADTPAGNWQDDGPRYV
D
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgtctacctcgaatttattgaataactcctttgatgaaagcgacgaagaggacgacaat
ttcaatccccaacctgcggatctctcagacaacgaagatgaaggacacaacacaaccagc
gcgcaaagacaaaatgaatcttcgcgtcatcaagtaggggacgaagatggctccgatgat
gaagcagccccttcgaatggcagaaaacacggttcgggcggtgctgacgacgatgatgat
gacgaagatgatgaaggcgagggagaagacattggtggaggtgctaatgatgatgacgat
gaggaagaggaagaagaggatgatgaagaagaaatcacgggacaccgccgcaagcgccgc
agagaccgtcgcaatgttttcctcgatgtcgaagctgaagtagatgaagacgaggatgag
aatgaggatgacgaagatgaattgaacgaaatgaatcacactttcattgcagacacacac
ccagatgacatggcagaccttccagatggtggtgagacagatgacaggcgtcaccgagat
ttggacaggagacgcgaaatggaggcgagtctcgatgcggaaaagcaagcagaaatttta
cgacaacgatatgcgaacaagggtcgatcatcgagaggcaccggagactcagcggtcgtt
ccaaaacgtctcttacttcctagtgtcgacgatcctagtatttgggccgtacgatgtaaa
gaaggaaaggaaagagaggctgttttctctataatgaagcgcatagaagagagagctggc
actaaagaggagcttgcgatcacttgcgcttttgagcgtggtggaacgcaatctacaatg
aagggtttcatttatgtcgaagcccagcgacaagccgacattttgactgctatggatggt
ctcatgaatgtctaccctcgaactaaaatgatgctggttgagatcaaggaaatgcccgac
cttctcagagttacgaaaagtccaactgtagaggttggagcctatgtacgacttaggcgc
ccagtaaaatatgcgggtgatcttgcgcaagtgctggaagttactgatactggtctcgaa
ctccgtgtcagatatgttcctcgtctcgactatggtcttcatgaggatactagtgtagga
gcggacggaaaaagaaagcgcccagtagccggaccacgcccgccccaacgactcttcagt
gaagccgaagctaagaaacgacatgcgaaacatctacaaggtcgaccggacacgaaaaca
tggaattacttcaatgaagaatatattaatggatattgcgagaaggaagttaaaatccag
gcgcttatcactaaggatgtcaatccaacccttgaggaagtcacaagatttgcttctggt
gctgaagatggtaccgaaaatttggatttaaatgctctcgctgcaagcttgaaagcaagc
acagccaatgcctcttatctacccggagacgtcattgaagtttacgagggggaacaaaag
ggcgtcgttggtaaagcagtttctgtcactggtgatattgtcacaatggctgtatccgaa
ggagcattaaggggacaaaccattgaaattcctatcaagggtttacgcaaacgtttccgt
gagggtgatcacgtcaaagtgattggcggcagtaggttcagagatgaagttggtatggtc
gtcaagatcattgaggatcgtgtcactttgctgagtgatcaaaataataatgaaatcact
gttttcagcaaagatcttcgggaagccagcgattctggtgggagcggtgcgttaggaaag
tacgagctttgggatttagtccaactagacccatctactgttgcttgtatcatcaaagtt
gaccgcgaatcacttgttgttcttgaccagaatggatctaacagaacagttattccatct
cagatttccaataagcttgaaaagcgaaggaatgcagtggcgacagatcgtaatggtgct
gagatcaagatggaggataccgtgaaagaatttgggggagaggctaggtctggaagaatt
ctacacattcatcgagcctatctcttcttgaagagttccgaattgagcgagaatgctggt
atatttgtggcacgaactactagcgtacaaagtgtctctgccaagggaggacgcatcact
gaaaatgcatcttcgccagatcttaactcgatgaacccagcaatgaagcttaaccccaag
aacaacggccaaatgcttccgcctaaatcatttggtcgtgataaatctatcggacagact
gtgacaatccgcaaaggcccatacaagggtttactgggtattgtcaaagataccacagac
accaatgcaagagtagaattacacacaaagagcaaggtaatcagtgtgccaaaagactgt
cttggattcaaggacaagataagtggagcatcggtagatccaaatggtttcagaggtggc
cctggtggtggtagaggaggaggagctccaagaggtcgtggtggatttggaggtgcaact
cctgggccaggttgggactctggtgctggtggacgaacaccaatgccgggtggtcttcct
gagcgcactccagcttggggaagaactcctcatggtggtgcccaaggtggacgaacgcct
gcctggaagtctggttctactgatggcggccgaacacctggttggtcgaacgacggatct
cgaactgtttatgcagcaaatgatggtagccggacagcctatggaggtggcaatagaact
cctgcttggtcatctggtgctaaaaccccagcttatggcttatcagataactatggatcc
aaaactcccgcgtatggcggtagtggtaatagtggagatgcatggggttcgaagactcca
gcctatcaaccaaataatgcaaacgacaactggaactctggccaatccaataacaacaac
tggggaacggcctacgatgctccaacccctggtggtcctttatcagcacctacaccagct
gcaatgaatgctccaaccccaggtggatattccgctcccacaccagctgcgatgaatgct
ccaactcccggggcttattcggcgccaacgccggctcctggctattggggtgctcctaca
cctcaagctatggatgctcctacacctggaccaggatattatgcaggtgctcctacaccg
ggtgcctatgctgcggatactccagcaggtaattggcaggatgatggtcctagatacgta
gattaa
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integrated database retrieval system
