Botrytis cinerea (Gray mold): BCIN_05g05520
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Entry
BCIN_05g05520 CDS
T01072
Name
(RefSeq) Bcrad50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
bfu
Botrytis cinerea (Gray mold)
Pathway
bfu03440
Homologous recombination
bfu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BCIN_05g05520
03450 Non-homologous end-joining
BCIN_05g05520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfu03032
]
BCIN_05g05520
03400 DNA repair and recombination proteins [BR:
bfu03400
]
BCIN_05g05520
DNA replication proteins [BR:
bfu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
BCIN_05g05520
DNA repair and recombination proteins [BR:
bfu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
BCIN_05g05520
BRCA1-C complex
BCIN_05g05520
NHEJ (non-homologous end-joining)
MRX complex
BCIN_05g05520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SMC_N
AAA_21
SbcC_Walker_B
AAA_29
AAA_22
ABC_tran
DUF2335
AAA_16
Motif
Other DBs
NCBI-GeneID:
5440316
NCBI-ProteinID:
XP_024548866
LinkDB
All DBs
Position
5:complement(join(1936574..1936831,1936897..1940379,1940439..1940525,1940580..1940670,1940735..1940766))
Genome browser
AA seq
1316 aa
AA seq
DB search
MSKIEKMRICGVRSFDHKGWENISFNTPLTLIVGLNGSGKTTIIECLKYATTGAQPPNSK
VGGAFIHDPKLCGEKEVLAQVKLSFQSTTGSRMVITRCMQLTVTKTARKMKTLDAGLMVN
NGGERTAVSHKVGEIDKIMQTALGVSEAVLDNVIFCHQDDSLWPMSEPSQLKKKFDDIFE
ATKYTKAVDSLKSLKKDYAQQIKGMIADESIAKDNKDKGEKTKSRCEELSAQIDQLSEEA
LKDKANMEAVREVVDAKQAQAAEFWELVQKLRTNKERVKFSEENLESLQKRIKPLSESDE
WLKSTLDQYADRILEMEQQDEELQKQYRDQQQKVSANTTELGKKQADLGRQQALKQAYEE
ELESRIQLVKSAASKHAIRGYDDDINESRVNEFIERIRKLSRDKERELERAKTATNEELK
NVQTTLTELQNQHAIRVQEKVTAKQTISNNERKVSPKQTELGFIQFDEGDKTGLEASHNE
TKDLLEKLRTQFDGAGWDSRISTSNGRLRELEDEEKSLRKEAFEINKRSNDRAQLDYVME
ELKKTKGKLDTMKATHGAKLDSILGSDWQVDTLAKDFQRALDREKDEVSDATNEQEVAKK
SHSEAGFRFNALREDLKAKKEQLKACENAVLNSIMIEDMKPLVSVEEYPRELNQLEEERD
EVRDNIDGFKHKIEYFTQCLTTIQTKDMCKLCERGFAEEAHRSAAMKKIQKLLNKDARER
LQGELEMYNEQLKTAKAAQSQYDIYQSLKDEIPNVEQEMKKAEDEKQRLLEEVEHHDSIV
ERKNARQRDVESLTHIISSIIRYYSDIMDHEAKIDSLASQQSIAGSIMTVDDIQERQTAC
SENMREVREQLSKISAEKDAAKDRINDVERDLSRKSQRLRDVIHGLAKKQALRKEIDELL
ESSTQQRETMNHADAELEILKPKIDTAKAKYEDIQQQGHTKEREVRTQKEKLADTVRQFL
QHEKSINGYIDNGGPENLAACERAIKSIQQDQKRIGEEMNGITTDLNALRAKKSDSDRLK
TNISDNILYRQELAKLEVYKKQTIDLESQNVEGNFQTLTKEAERIQATFYEHRRLYQQKT
AILSEKDQNLAQYLQDWDLNYKNARSEYRTAMIKVKTTKAAIDDLGKMITAMDKAIVKFH
SVKMEEINRIAGELWQTTYQGTDVDTIMIRSEKDEGETTAGNKKTNYKYRVVMVKQDVEM
DMRGRCSAGQKVLACIIIRLALAECFGINCGLIALDEPTTNLDQDNIKALAQSLHDIIKS
RQQQANFQLIIITHDEEFLKVMQCSDFCDDFYQVSRDQEQNSKIEKIPIAQVMEGN
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaatagaaaaaatgagaatatgcggggtgcgatccttcgatcacaagggctgg
gaaaatatctcgttcaatacccctctcacactcatcgtcggactcaatggttcaggaaaa
actacaatcatcgaatgtttaaagtatgcgacaactggcgcacagccaccgaatagcaag
gttggaggggcttttattcatgaccccaaactctgcggcgaaaaggaagtcctagcccaa
gtcaagctctcatttcaaagtacaaccggatcgagaatggtcatcacgagatgtatgcaa
ctcacggttacaaagacagccagaaagatgaagaccctagatgccggattgatggtcaac
aatggtggcgagaggactgccgtatctcacaaagttggtgaaatcgacaagataatgcaa
acagccttgggcgtttctgaagctgttttggacaatgttattttctgtcaccaagatgat
tcattatggccgatgagcgagccttcacaactcaagaagaagtttgacgatatattcgag
gcgacaaaatacaccaaggctgtcgatagtctcaagtctttgaagaaggattatgctcag
cagattaaaggaatgatagccgacgaatcgattgctaaggataacaaggataaaggcgaa
aaaaccaagagccgctgtgaagaactttcagctcagatagatcagttgtccgaagaggct
ttgaaagacaaagccaacatggaagcagttcgagaggtggttgacgcgaaacaggcacag
gcggccgagttttgggagctagttcaaaagctcagaactaacaaagaacgggttaagttc
agtgaagaaaatctggaatctcttcaaaaaagaatcaagcccctttctgaatcagatgaa
tggcttaaatcaacattggatcaatacgcggatcgtatactggagatggaacagcaagac
gaagaacttcagaaacaatatcgtgatcaacagcagaaagtatcggcaaatacaaccgaa
ttgggaaaaaagcaagcagatttaggtcgacaacaagccttgaaacaagcctatgaagaa
gagctggaatctcgaattcaactggtcaagagtgctgcatccaagcatgccattcgaggc
tacgatgacgacatcaacgaatctcgagtgaatgaatttatagaaagaatcagaaagctg
tctcgcgacaaggaacgtgaattggagcgggctaagacagctactaatgaagaattgaaa
aacgtccagactacgttgacggaacttcagaaccaacacgcaatacgtgttcaagaaaag
gtcacggccaagcaaacaatttccaataacgaaaggaaagtgagtcctaagcaaacagaa
ctgggttttatccaatttgacgaaggtgataaaaccggtcttgaggcatctcacaatgag
actaaagatctgttggagaagctcaggactcaatttgacggtgcaggttgggacagtcgc
atcagtactagcaatggacgcttgcgtgagcttgaagatgaggaaaagtcattgaggaaa
gaggcttttgagatcaacaagcgttcgaacgaccgcgcgcaacttgactatgttatggag
gaattgaaaaaaaccaagggaaaactagacaccatgaaagcgacgcacggcgcaaagctc
gattcaattctcggttcagactggcaagttgatactctcgcaaaagatttccaacgtgca
ttggacagagagaaagatgaagtttcagacgcaacaaatgaacaagaagttgcgaagaaa
tctcactctgaagcagggtttcgattcaatgcacttcgtgaagatcttaaagctaagaag
gagcaactaaaggcttgtgagaatgctgtactaaattctataatgattgaagacatgaaa
ccattagtaagtgttgaagaatatcctagggaactgaatcagctggaagaggagcgtgat
gaagttcgagataatatcgatggctttaaacacaagatcgaatacttcacccaatgctta
accaccattcagactaaggacatgtgcaaactctgcgagagagggtttgcagaagaagca
catcgttcagccgccatgaagaaaatccagaaacttctcaacaaagatgcccgagaaaga
ttgcagggagagctggagatgtacaatgaacaattgaagactgccaaagccgctcaatca
cagtatgacatttatcaatctctcaaggacgaaatcccaaatgttgagcaagaaatgaag
aaggcggaagatgagaagcaaagattgcttgaagaagttgagcaccacgacagtattgtt
gaacgtaagaacgctagacagagagatgtcgaatctctgacacatatcatctcgtccatt
attaggtactatagtgatattatggaccacgaggcaaagattgatagcttagcatcccag
caaagcattgctggaagtatcatgactgttgatgacatccaagaacgacagacagcttgt
agcgaaaatatgcgcgaggtcagagaacaattgtcgaaaatttcagccgagaaagatgca
gctaaggacaggataaacgacgtggagcgtgatctttctcgcaaatcgcagagacttcgg
gatgtcattcacggattggcaaagaaacaagctttgcgaaaggagattgatgagcttctc
gagagtagcacacagcaacgtgaaacaatgaaccatgctgatgccgagctggaaattttg
aaacccaaaattgatactgcaaaggctaaatacgaagacattcaacagcaaggtcataca
aaggaaagagaagtccgaactcagaaggagaagttggcagacactgtccgtcaattcctg
caacacgagaaaagcatcaatggatacattgacaatggtggccctgaaaatcttgctgct
tgtgagcgagcaattaaatccattcaacaggatcagaagcgtatcggcgaagaaatgaac
ggtattactaccgatttgaatgcactccgagccaagaagagtgattccgatcgactaaag
acaaatatcagcgacaatatcctctaccgtcaagaattggctaagttagaggtttataag
aaacaaactattgacttggagtctcaaaatgtggaaggaaatttccaaactctaacaaag
gaggccgaaagaatacaagccacgttctacgaacatcgtcgcctctatcaacaaaaaaca
gccattctttcagagaaagaccaaaacttggcgcaatatttacaggattgggacttgaat
tacaaaaatgctcgatcagagtatcgcacagctatgatcaaagtcaagacgacgaaagct
gctattgatgatctaggcaagatgataacagctatggacaaagcaattgtgaaatttcat
agcgtgaagatggaagaaattaatcgaattgctggagaattgtggcagactacttaccag
ggtacggatgttgatacgatcatgattcgttccgagaaagatgagggcgaaaccacggct
ggcaataagaagacaaactataaatatcgagttgtgatggttaagcaagatgtcgagatg
gatatgcgtggtcgttgcagtgctggtcagaaagtcttggcttgtattatcattcgttta
gcgctcgccgaatgtttcggtattaattgcggtctcattgcactcgatgaacctaccacc
aatctagaccaagacaacataaaagcactcgcacaatctctacatgacatcattaaatcc
cgtcaacaacaagcaaatttccaactcatcataattactcacgatgaagagtttctgaag
gttatgcagtgttctgatttctgtgacgatttctatcaagtcagtagggatcaggaacag
aatagtaagattgaaaagattcccattgctcaggtcatggaggggaattga
DBGET
integrated database retrieval system
