Botrytis cinerea (gray mold): BCIN_09g03410
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Entry
BCIN_09g03410 CDS
T01072
Symbol
Bcsub2
Name
(RefSeq) Bcsub2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bfu
Botrytis cinerea (gray mold)
Pathway
bfu03013
Nucleocytoplasmic transport
bfu03015
mRNA surveillance pathway
bfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BCIN_09g03410 (Bcsub2)
09122 Translation
03013 Nucleocytoplasmic transport
BCIN_09g03410 (Bcsub2)
03015 mRNA surveillance pathway
BCIN_09g03410 (Bcsub2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfu03019
]
BCIN_09g03410 (Bcsub2)
03041 Spliceosome [BR:
bfu03041
]
BCIN_09g03410 (Bcsub2)
Enzymes [BR:
bfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCIN_09g03410 (Bcsub2)
Messenger RNA biogenesis [BR:
bfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
BCIN_09g03410 (Bcsub2)
Spliceosome [BR:
bfu03041
]
Complex C
Other components
EJC/TREX
BCIN_09g03410 (Bcsub2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
BCIN_09g03410 (Bcsub2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-GeneID:
5432135
NCBI-ProteinID:
XP_024550849
UniProt:
A0A384JSK1
LinkDB
All DBs
Position
9:complement(join(1245589..1245640,1245701..1245958,1246009..1246369,1246420..1246830,1247296..1247548))
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AA seq
444 aa
AA seq
DB search
MSAAEEDLIDYSDEELATTEAPAPAAGANGGVKGDSGNLTVSGNAAAAKKGSYVGIHSTG
FREFLLKPELLRAISWCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQ
VEVVAGETSVLVMCHTRELAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPET
HPHIIVGTPGRLNALVRDKYLRLNSVKVFVLDECDKMLDQIDMRRDVQEIFRATPPQKQV
MMFSATLSQEVRPICKKFMQNPLEIYIDNETKLTLYGLQQYYIKLEEKEKNRRLNELLDE
LSFNQVIIFVKSTVRATELDKLLRECNFPSVAIHSGVSQEERIKRFNDFKDFNKRICVAT
DVFGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQEVLKAVE
KRFEVALPEYPEGGVDSAAYTKTD
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgccgaagaagatttgatcgattactctgatgaggagctcgcaacaacagag
gcaccagcaccagctgctggcgcaaatggaggagtcaagggtgattcgggaaatttgacc
gtgtctggaaatgcagctgcggccaagaagggcagttatgttggtatccattcgactggt
ttccgcgaatttttattgaagccggagcttctacgagccatttcctggtgcggattcgaa
catccttcggaggttcagcaagtctgtattccccaagcgattcttggtacagatgtccta
tgccaggccaaatctggtctcggtaaaaccgccgttttcgtcctcacaactctacaacaa
gtcgaggtagtcgccggtgaaacatccgtccttgtgatgtgccacactcgtgaattggct
taccaaattcgaaatgaatatcaacgattctgtcacttcatgccagatgtcaagattggt
gttttctacggtggagttcctattagcaaggatgttgaggtattgaagaatcccgagacc
cacccacacatcatcgtcggtaccccaggtcgattgaacgcccttgttcgagacaaatac
ttgcgcctcaacagcgtcaaggtttttgttcttgatgagtgtgacaagatgttggatcaa
attgatatgcgtcgcgatgttcaggagattttcagagccacaccaccacagaagcaagtc
atgatgttcagtgctactctttctcaagaggttcgacctatctgcaagaagttcatgcag
aaccctcttgagatctacattgataatgagacaaagctcactctttatggtcttcaacaa
tattacatcaaattagaggagaaagagaagaatagacgtctcaatgaattgttagatgag
ctttccttcaaccaagttatcattttcgtcaagagcacagtcagagccactgaacttgac
aagctcttgcgcgagtgtaacttcccatcagttgcaatccactctggtgtcagtcaagag
gaacgtatcaaacgtttcaacgacttcaaggatttcaacaagcgtatctgtgttgctacg
gacgtgttcggtcgtggtattgatgtcaacaagattaacttggctattaactacgatctc
ccacccgatgcagactcataccttcatcgtgttggacgtgctggtcgtttcggaaccaag
ggtcttgctatctcattcgttagcaatgaggcagaccaagaggttctgaaggctgttgag
aagagattcgaagttgcactcccagagtaccctgagggaggtgtcgattccgccgcttac
accaagactgactaa
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