Botrytis cinerea (gray mold): BCIN_11g01650
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Entry
BCIN_11g01650 CDS
T01072
Name
(RefSeq) hypothetical protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
bfu
Botrytis cinerea (gray mold)
Pathway
bfu03018
RNA degradation
bfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BCIN_11g01650
09123 Folding, sorting and degradation
03018 RNA degradation
BCIN_11g01650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfu03019
]
BCIN_11g01650
03041 Spliceosome [BR:
bfu03041
]
BCIN_11g01650
Messenger RNA biogenesis [BR:
bfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BCIN_11g01650
mRNA degradation factors
5'-3' decay
Lsm complex
BCIN_11g01650
Spliceosome [BR:
bfu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
BCIN_11g01650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Gemin6
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
5437198
NCBI-ProteinID:
XP_001556629
UniProt:
A0A384JWD7
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Position
11:join(534567..534591,534722..534798,534924..535118)
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AA seq
98 aa
AA seq
DB search
MSLSSYVNKKVLILTADSRTLVGTLLSCDQQTNLVLSQTIERIIRPPEDIEASSEVPHGL
YLIRGDNVVVVGLVDEELDDSINWVEVRGAVIGGTKHS
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcactctctagctatgtaaacaagaaagttctaatcttaactgcggattcaagaaca
ctggttggtacacttttgagttgtgatcaacagaccaatttggtcctatcccaaaccatc
gagcgcataatccgtcctccagaagatatcgaagcttctagtgaagtcccacacggtctc
tatctaatccgtggtgataatgtggttgtagttggattggtggatgaggaattggatgat
agtattaattgggtggaggttaggggagctgtcattggagggacgaagcattcttga
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