Botrytis cinerea (gray mold): BCIN_12g00330
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Entry
BCIN_12g00330 CDS
T01072
Symbol
Bcpat1
Name
(RefSeq) Bcpat1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bfu
Botrytis cinerea (gray mold)
Pathway
bfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCIN_12g00330 (Bcpat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfu03019
]
BCIN_12g00330 (Bcpat1)
Messenger RNA biogenesis [BR:
bfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BCIN_12g00330 (Bcpat1)
mRNA degradation factors
5'-3' decay
Decapping complex
BCIN_12g00330 (Bcpat1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
5438582
NCBI-ProteinID:
XP_024551979
UniProt:
A0A384JYU5
LinkDB
All DBs
Position
12:join(116131..116258,116330..118360,118415..118703)
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AA seq
815 aa
AA seq
DB search
MSFFGFDPSQAPHERGHNTAAPGFGQHADPFASLSGTGNDNEAFDFEDTYDGLGDQLQET
GDDFNDDTFGGGAGDSIASKPVGNNFDFFGQTAKVSDAINEEQMRYTRQQPVVSRTTPAA
SSYSQPQTSRPARTGYERYQESEYVPDMQVDANLWGVAPKQAPKAATPPAAGTSAPSRKM
MSLEEVEAAMRAQAKKPSQPQVSVQHQPMPPSQPQYQQPPPQQYQNFHQQAPQQQQQQFP
IQVSAPPQSEQRQLPVEQQIHILQRPQVPVSQANVPSIPIQPAHMQNMNRFPNQPHGAQR
GHHHPHASGNRHVITHPQQLVNLSEEERAAFLLEDAKRAKRNHKIFLLSKDNGLMTPQDK
NFITRIQLQQLVTATGNPNEHGIDSSLSEDFYYQVHSQIRGGPRQNPHQPLSNFAQTYLF
QTGNRHNNMRRQARGGDNHVQRMEQQVQRAVEAAKNKPKNKQLVIEGSLGKISFSNAKTP
KPLLNIKRTDSNEPRPGNSPNPRKANLVSGSNRKSILTDIENVYSTLMELEDHERSKPRP
LSHDEINPQIAGLNQDWNERQEFLNKQLWRNLRIHEPIGATTVHPFIAFLSFNKGKKAIP
RVFRHIFDEQRATILTMIILHLDKLDVVRLAVPSPDGIPLSAETRENIDLFQVTVMSSLL
GFLHDADFQITTGVLGLILNLNIDLIARTRIGLSLLTMILSRAEITKQAGDVDERGWNDW
LSTHNAFFDALEPTLPEIFPGTVNTGEDVYVWQFLAAIGIGANPEQQQRLVMAVKDRVME
TVGLAKTLPPAMSIQRLANVNLFMRSIGLDVELLA
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctttggctttgatcccagtcaagctcctcacgagaggggccataatactgct
gctcctggctttggccaacatgcggatccatttgcaagtctttctggcacaggaaacgat
aacgaggccttcgatttcgaggatacatatgatggtttaggagatcagcttcaagaaacc
ggtgatgacttcaatgacgatacctttggtggtggtgcaggcgactctattgcaagcaag
ccagttggaaataactttgacttttttgggcaaacagcaaaggtctccgatgctatcaat
gaggaacaaatgcgatacacccgacaacaaccagtagtatctaggacaactccagccgca
tcttcatactctcaaccacaaacgtcaagacccgccagaactggctatgagagatatcaa
gagtcggaatatgttcctgatatgcaggtggatgcaaatctgtggggtgttgctccgaaa
caagctccaaaagccgccactcctccagctgctggtacatctgcaccgagccgaaaaatg
atgagtttggaagaagttgaagcagccatgagagctcaagctaagaagccatcgcaacct
caagtatctgttcagcaccaaccaatgccaccatctcaaccacaatatcaacagcccccg
cctcaacaatatcaaaatttccatcaacaagcgccacaacagcaacagcagcaattcccg
atccaagtcagtgccccgcctcaatcggaacaacgccagcttcctgtcgagcaacaaatt
cacattttgcaacgtccccaagttccagtcagccaggcaaatgtcccatctatcccaatc
caaccggcacatatgcaaaacatgaaccgatttcccaaccaaccccacggtgcgcaacgt
ggccaccaccatccacatgcttctggaaatcgacatgttatcactcacccacaacaattg
gtaaacttatccgaagaagagagggccgcattcttgttggaagatgccaagagagcaaag
cgaaaccacaagatatttttgttgtcgaaggacaatggcttgatgacgccccaagacaag
aactttatcacccgtattcaattacaacaattggtcaccgctactggaaatccaaacgaa
catggcatagattcttctctttctgaggacttctattatcaagttcacagtcagatccga
ggtggaccacgccaaaaccctcatcaacctctgagtaacttcgcacagacatatcttttc
caaaccggcaatcgtcacaataacatgcgaagacaagctcgtggtggcgacaatcatgta
caacgtatggaacagcaagtgcaacgagctgtggaggcggcaaagaacaagccaaagaac
aagcaattggtcattgaaggaagtttgggaaagatctcattcagcaacgcaaagacacct
aagccactgttgaatatcaaacgaacggatagcaatgaaccaagacccggaaattcaccc
aaccctcgcaaggctaacctcgtcagtggtagcaatagaaaatctatattgactgatatc
gagaatgtgtacagcacattaatggagctagaggaccatgaacgctcaaaacctagacca
ttgagtcatgatgaaatcaacccacaaattgccggtttgaaccaagattggaatgaacga
caagaattcctcaacaagcaattatggcgtaatctgaggattcatgaaccaattggcgca
acaactgttcatcctttcattgccttcctttcattcaataagggcaaaaaggcaattcct
cgagttttcagacatatctttgatgaacagcgcgctactatcttgaccatgattattctt
caccttgataaacttgatgtcgttcgattggctgtgcctagccctgacggaatcccactc
agtgctgagactcgtgaaaacattgatctcttccaagtcacagtcatgtcgagtcttctt
ggattcctccacgatgccgatttccaaatcactactggtgttttgggacttatccttaat
cttaatattgatttgattgcacgtactagaattggtcttagtctattgactatgattctt
agtcgggctgagatcaccaagcaagctggggatgttgatgagcgtgggtggaatgactgg
ctatccactcacaatgcattcttcgatgcccttgagcctaccctcccagagatcttccct
ggtaccgtcaacactggcgaagatgtatacgtgtggcaattccttgcagccattggtatt
ggtgccaatcctgaacagcaacaacgtttagttatggctgtcaaggatcgtgttatggaa
actgtcgggcttgcaaagacattacctccagctatgtctatccaacgactcgcaaatgtt
aacctcttcatgcgttctatcggattggatgttgagttacttgcatga
DBGET
integrated database retrieval system
