Botrytis cinerea (gray mold): BCIN_12g03610
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Entry
BCIN_12g03610 CDS
T01072
Symbol
Bcclp1
Name
(RefSeq) Bcclp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bfu
Botrytis cinerea (gray mold)
Pathway
bfu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
BCIN_12g03610 (Bcclp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfu03019
]
BCIN_12g03610 (Bcclp1)
Enzymes [BR:
bfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
BCIN_12g03610 (Bcclp1)
Messenger RNA biogenesis [BR:
bfu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
BCIN_12g03610 (Bcclp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
Dynamin_N
nSTAND3
AAA_24
SRPRB
Sigma54_activat
AAA_15
AAA
AAA_35
ABC_tran
AAA_16
TniB
AAA_23
Motif
Other DBs
NCBI-GeneID:
5432770
NCBI-ProteinID:
XP_001552250
UniProt:
A6S936
LinkDB
All DBs
Position
12:complement(join(1239131..1239429,1239494..1239760,1239825..1240500,1240608..1240712,1240770..1240808))
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AA seq
461 aa
AA seq
DB search
MSIPGLGQAVHAARTAAPAAVAHTNIHELQANSEWRFEVAIGSSIEVKVLSGTAEIFGTE
LAVNHTYTFHGTKSSIYTWHGCRLEVNGPCEEYTAEETPMISYINTHFALENLRSDAKKA
GQDGPRVLIVGPNNTGKTSLAKLLTAYAVRMGRQPIVVNTDSREGMLSIPGSLTAAAFKS
IVDVEEGWGSSSTSGPSPVPVKLPLCYYYGLPSPEDNVKLFKPVVTRLALAATSRLQDDA
VCRETGMIIDTPGVISQGKGGYDLISHIVSEFAVNIILVLGSERLHSEMLRRFSTHKTDN
GEAITLVRLDKSGGCVDRDDAFMQQMREATIKEYFFGDAKRTLSPHTQVVNFDELSIYKV
KEAHSMQSAFLPGGEEEVEPTQYEKVEPTPSMLHCIFAVMHASTRDSQDTIRDASVMGFV
YVAEVDEKKKRMKILAPLNTRVTDRPLIWGSWPEAPVNLMG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcgataccagggcttggtcaagccgttcacgctgctaggactgctgcaccagcagcc
gttgcgcatacgaatattcacgagctccaagctaactcggaatggcgcttcgaagtcgca
attggttcgagcatcgaagttaaggtcctctctggtaccgcagaaatcttcggcacagag
ctcgcggtcaatcacacatatacatttcacggcaccaaatcttccatctatacctggcac
ggttgtcgcctcgaggtaaacgggccatgcgaggaatacaccgccgaggaaacccccatg
atctcctacatcaacacgcatttcgcgctggagaacctacgatccgacgcgaagaaagca
gggcaggacggtccgcgcgtgctcatcgtcggacctaacaatacgggcaagaccagcttg
gccaaactgctcaccgcgtacgcggttcgcatgggccgccaaccaattgttgtgaatacg
gattcgcgcgagggaatgctgagtataccggggagtttgacggcggcggcgtttaagagt
attgtggatgtggaggaggggtgggggagtagttcgaccagtggaccgagtcccgtgccg
gtgaagctgccgttgtgttattattatgggcttccgagtccggaggataatgtgaagttg
tttaaaccggtggtcacgaggctggcgttggcggcgacgagtcgtttgcaggacgatgcc
gtgtgtagggagacgggcatgattattgatacgccgggggtgattagtcaggggaaagga
gggtatgacttgatttctcacattgtgtcggagtttgcagttaatattatcctggtcttg
ggctcggaacgtttacacagtgaaatgttacggcgattctcaacccacaagactgataac
ggagaggccattactctcgtccggttagacaaatcaggaggttgtgttgacagagacgat
gcattcatgcaacaaatgcgggaagcaaccatcaaggaatactttttcggagatgcaaaa
agaaccttgagtccgcacacacaagtggttaatttcgatgagctttcaatttacaaagtc
aaagaagcacactcgatgcaaagtgcatttttacctggaggagaagaagaagtcgaaccc
acacaatatgagaaggtagagcctacaccctcgatgttgcattgcatatttgctgtcatg
catgcgtcgactcgggattctcaggacactattcgagatgcgagtgtcatgggctttgta
tatgtagcagaagtcgatgagaagaaaaagagaatgaagattctagcaccgcttaatacg
agagttacggatagaccattgatttggggtagctggcctgaagccccagtaaacttgatg
ggataa
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