Botrytis cinerea (gray mold): BCIN_12g05100
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Entry
BCIN_12g05100 CDS
T01072
Symbol
Bcsyf1
Name
(RefSeq) Bcsyf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bfu
Botrytis cinerea (gray mold)
Pathway
bfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BCIN_12g05100 (Bcsyf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfu03019
]
BCIN_12g05100 (Bcsyf1)
03041 Spliceosome [BR:
bfu03041
]
BCIN_12g05100 (Bcsyf1)
Messenger RNA biogenesis [BR:
bfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
BCIN_12g05100 (Bcsyf1)
Spliceosome [BR:
bfu03041
]
Complex B
Other components
Prp19-related factors
BCIN_12g05100 (Bcsyf1)
Complex C
BCIN_12g05100 (Bcsyf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_8
TPR_15
SNAP
ARM_TT21
RPN7
Motif
Other DBs
NCBI-GeneID:
5434437
NCBI-ProteinID:
XP_001553867
UniProt:
A0A384K0B4
LinkDB
All DBs
Position
12:join(1722068..1722169,1722237..1722407,1722460..1724703)
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AA seq
838 aa
AA seq
DB search
MPGELLPIMAAPSVPEIKSALTLSIRGKPDLYLISEEDTIYEQDILRDPGSTKPWLAYIE
FKFQHGTKLEQAFVLERACLQLPRSYKLWKMYLTLRMKHLGKLNPAAFASEYAKVNALYE
RALILLNKMPKIWEMYLQFLLLQPLVTLTRRTFDRALRALPITQHNRIWALYRPFANSAS
GSTAVKIWRRYMQIHPEDAEDFIELLIEMKLYTEAVKKYMDILNNPKFRSKHGKGHYQLW
SEMVDLLVEHAKEVETGDEIGIDVEKIIRSGIERFADQRGKLWSGLATYWITRGSFERAR
DVFEEGITTVMTVRDFTLIFDSYAEFEESITGVLMEAAAVRSEKGIVDENADFDLDIRMM
RFEQLMDRRPFLLNDVLLRQNPSNVPEWMKRISLWGDNKVEVVKAYTDAIAAIQPKKAVG
QFHELWSNYAKFYEEGGDLRNARVIFEKAVKVPFKSVAELADTWIEWAEMELRNENFDEA
VKIMAKAVQAPKRSNVDYFDETLSPQQRVHKSWKLWSFYVDLVESVSTLEETKKIYERIF
ELRIATPQTVVNYANLMEENKYFEESFKVYERGLDLFSYPVAFELWNLYLTKAVDRKIGI
ERLRDLFEQAVEGCPPRFAKVLYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFN
FYITKSASNFGLPSTRPIYERAIAALPDKDARDMCLKFADMEKRLGEIDRARAIYGHASQ
FCDPRTSPTFWSKWESFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARSQAKP
DEDGEEAADAMAALEREARAPVGFVPASTGPQGGNIKQPAIVVTENPDAIELDGMDDD
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgcctggagagttgctccctataatggctgctcccagcgtccccgaaataaaatccgcc
ttaaccttatcgattcgaggaaagccagatttgtatcttatttctgaagaagataccatc
tatgaacaggatatcctgcgcgacccgggcagtacgaagccttggttggcatacatcgag
ttcaaatttcagcatggcacaaaacttgagcaagccttcgttttggaacgagcttgttta
caattacccagatcttacaagttatggaaaatgtaccttacattacgaatgaagcatttg
ggaaagttaaatcctgctgcttttgcctccgaatatgccaaagtcaacgcgctttacgag
agagccttgatccttctgaataagatgccgaaaatctgggagatgtaccttcaatttttg
ctactccaacccctcgttaccctcacgcgccgaactttcgatcgagcacttcgagcttta
cccattacacaacataatagaatatgggccctttaccgtcctttcgcgaattccgcgtcc
ggttctacagctgtcaagatatggcgacgttacatgcagatccatccggaggatgccgag
gattttattgaacttttaattgagatgaaactttacacggaagccgtcaagaaatatatg
gatatactcaataacccaaagttccggagcaaacatggaaagggccattatcaactatgg
agtgagatggtagatcttctggtggagcatgccaaggaagttgaaactggagatgaaatc
ggaattgatgtcgagaaaatcattcgaagtggcattgaaagatttgcggatcagagagga
aaattatggtctggattagcaacatactggatcactcggggcagttttgaacgggcacga
gatgtatttgaagagggaatcactacagtcatgaccgttcgggatttcacattgatattc
gattcttatgccgaattcgaagaatcgattactggagtcctaatggaagccgctgcagtt
cgatccgagaagggtattgtggatgaaaatgcagactttgatttggatattcgaatgatg
agattcgagcaacttatggatcgccgaccattcttactgaacgacgtattactacgacaa
aatcccagcaatgtacctgaatggatgaaacgtatttctctgtggggggacaacaaagtt
gaagtggttaaagcatacacagacgcgattgctgctattcagccgaagaaagccgttgga
cagttccacgagttatggtcaaattacgccaagttctacgaggagggtggggatttacgt
aacgctcgagttatcttcgaaaaagcagtgaaagtacctttcaaatctgtggccgaactt
gctgatacttggattgaatgggcggagatggaattaagaaacgagaacttcgatgaagct
gtaaaaattatggcaaaggcagtccaggcaccgaagcgatctaatgttgattatttcgac
gagactctttcacctcaacaaagagttcacaagagctggaagctgtggagtttctatgta
gacttggtagagagtgttagcacattggaagagactaagaagatatacgaacgaatattc
gaacttcgaattgcaacaccacaaactgttgtcaattacgccaatttaatggaagagaac
aaatattttgaagaatccttcaaagtctacgagagaggacttgatctattcagttatccg
gtagcattcgaactctggaatttatacttgaccaaggcagttgatagaaaaattggtatc
gaacgtcttcgagatttattcgagcaagcagtcgagggatgtcctcctaggtttgccaaa
gtattgtatcttatgtatggaaatctcgaggaggagcggggtctagcaaggcacgcgatg
agaatttacgaaagagcaactcgggctgtctctgatgaggatcgcgcagatatgttcaac
ttttatatcaccaagtcggcttccaatttcggtttgccttcgacacgaccaatttatgaa
agagctattgcggcactaccagacaaagatgctagagatatgtgtttaaaattcgccgat
atggagaaacgattgggcgagatcgatcgtgcaagggcgatttacggacacgcatcacaa
ttctgcgatcctcgaacaagtccaacattttggtcgaaatgggaatcttttgaggttcaa
catggaaacgaagatacattcaaagagatgcttcgtatcaagagaagtgttcaagcacaa
tataatactgatgtcaatttcattgcttctcaagctcttgctcgaagtcaagcaaaacct
gatgaggatggagaagaggctgcggatgcaatggcagcattagaacgcgaggcaagagct
cctgttggattcgtaccagcaagcacaggtcctcaaggtggaaatattaagcagccagca
atagttgttactgaaaatcctgacgctatcgaattagatggtatggacgacgattga
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