Botrytis cinerea (gray mold): BCIN_16g04000
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Entry
BCIN_16g04000 CDS
T01072
Symbol
Bcssd1
Name
(RefSeq) Bcssd1
KO
K18748
protein SSD1
Organism
bfu
Botrytis cinerea (gray mold)
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfu03019
]
BCIN_16g04000 (Bcssd1)
Messenger RNA biogenesis [BR:
bfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
BCIN_16g04000 (Bcssd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
DUF5774
Motif
Other DBs
NCBI-GeneID:
5428280
NCBI-ProteinID:
XP_024553947
UniProt:
A0A384K7E7
LinkDB
All DBs
Position
16:complement(join(1463241..1463280,1463334..1464688,1464741..1467400,1467641..1467779))
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AA seq
1397 aa
AA seq
DB search
MEQQQQPQGQAPQGGVPGPTGRRLHIAHRRSPSELTPLMSMFSNPNMEQLAIQQQIELLQ
AQQQQIQATHQQYVNMGMIPNQHLAAPGQGFNPLQQQQMQNQNAFQFSNQLQPQQMNVPM
GAPPTQPLSHRRNQSALPNMGMAMAGPPPAPSSGAAGQGFTQDFGGSNSRGENQSTRGGR
GGGPPGGGHQRRHSLALPEAKKAAEIAQQKRTTSGFQFPIPGAAGATSTGGDNSENASPG
DDKPTQSTGNHLTPSSAMRGGRGAHGRSQSMAVGGGQNGRGGSSQRGGGSFQFPPTQGST
DNGAGQNNDFGRRNSAQAGHARNSSRNFDGNWRNQVPQNAAPQDPQPQMGNFQGQQNQGG
FQPGHRNRGSINQSMSNIGGFQYQGQPQLVQFAQGQMIMPQGLGFQQMNPLQLSQLQQQL
QASQQMNGQMGMQNGQQPQQQQQQRKTLFTPYLPQATLPALLGDGQLVSGILRVNKKNRS
DAYVTTHDGLLDADIFICGSKDRNRALEGDLVAVELLDVDEVWGQKREKEEKKKRKDITD
TRTGGSGNGNNDRNHHRDNSTNGDDQNQEGGLRRRGSLRQRPTQKKNDDVEVEGQSLLLV
EEEEVTDEQKPLYAGHIVAVIERVAGQMFSGTLGLLRPSSQATKEKQEAERQARDGNSGR
HQEQRQQDKPKIVWFKPTDKRVPLIAIPTEQAPRDFVEKHQDYADRIFVACIKRWPITSL
HPFGTLVEQLGKMGELKVETDALLRDNNFASDEFSDAVTRSVGLDDWSLEKEDETSISTR
RDFRNEKTFTIDPNGANELDDAIHVKTEADGKIEIGIHIADVAHFIKANSLVDREARKRG
TAVYLMNRSCAMLPPKIASDICSLTPGQDRLTVSVVFKVNAQTGAVFEDETWIGKSIIKS
GGKLTYKDVDAVLSGQTDVKLEGAEVKDIQILNAVAQKFRESRLGSDGETIAPLRLVYQL
DDENVPVEQNIFDSTPSHELIEELMNKVNSYVAQKIYQGLPEKALLRRQGPPNPRRLQTF
ADRMNKIGYEIDTSSSGRLQNSLFKVDDTDIRKGMETLLVKSMHRAKYFIAGKTQPHLYP
HYALNLPLYTHFTNPSRRYADLVVHRQLEAVLSEGKIEYNEDMETLVKTTESCNGKKDSS
QNAQEQSVHIESCRIMDRKREEAGGELISEGIVVCVYESAFDVLIPEFGFEKRVHCDQLP
LKKAEFRKNERVLELYWEKGVPSSAYVPEDERPKAGASQRTTNAAAAAKQAAVAERAKKE
HEEAQRKTTETGTISTDDVDALFDDDDDASDIAGSVAGVSLAERPTQSVPPSPTKNSISA
ATSLHRTRSDSKVPTGEPVEAKLSAKEKYLKYFTLREEDGEYIQDVKEMTRVPVILKTDL
TKSPPCLTIRSLNPYAL
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggagcaacaacagcagccgcaaggtcaagcacctcaaggtggtgtacccggtccaact
ggacgaagattacatattgcgcatcgaagaagtccgtcagaacttactccattaatgagc
atgttctccaaccctaatatggaacaactggctattcagcaacaaatcgagcttctacaa
gcacaacaacagcagattcaagctacacatcaacaatatgtcaacatgggaatgattccc
aaccaacatcttgctgctcctggccaaggtttcaatcctttacagcaacaacaaatgcaa
aaccaaaatgcatttcaattctctaatcagctccaaccacaacagatgaatgtaccaatg
ggagcccctcccacacagcccctctcacatcgtcgtaatcaatcggcacttccaaatatg
ggtatggctatggcaggtccaccacctgctccatcttcaggtgcagctggccaaggcttt
actcaagactttggtggaagcaacagccgtggtgagaaccaatctacaagaggtggccgt
ggtggaggacctccaggtggtggtcaccaaagacgtcattctcttgccttgcctgaagcc
aagaaggcggctgaaatcgcacaacagaagagaactacttcgggatttcagttccctatt
cctggtgcagctggagctacgtcgactgggggtgataattctgaaaatgcaagcccaggc
gatgacaaacctacacaaagtaccggcaatcatttgaccccaagctctgctatgcgtggt
ggtcgtggtgctcatggtagaagtcaaagtatggctgttggaggtggccaaaatggtcga
ggtggatcatctcaacgaggtggtggctcatttcaattcccaccaacacaaggatctaca
gacaatggtgcaggtcaaaacaatgactttggaagaagaaacagtgcccaagccgggcat
gctcgtaactcttctcgaaactttgatggtaactggagaaaccaagtacctcaaaatgct
gctcctcaagatccacaaccacaaatgggtaacttccaaggtcaacaaaaccaaggtggt
ttccaaccaggtcaccgtaatcgtggatcgatcaatcaatccatgagtaacataggtgga
tttcaataccaaggtcaaccccaattggtacaatttgcccaaggacagatgatcatgcct
caaggcttagggtttcagcaaatgaatcctttacaactttctcagcttcagcagcaatta
caggcttctcagcaaatgaatggacaaatgggcatgcaaaatggccagcaaccacaacag
cagcaacagcaacgtaagaccttgttcaccccttatcttccccaggctactcttccagcc
cttcttggcgacggtcagctcgtttccggtattttaagagttaacaagaagaatcgttct
gatgcctacgtcactactcatgatggattgctcgacgcggacatcttcatctgtggtagc
aaggatcgtaaccgtgctctagagggagatctcgttgcagttgagttattggatgttgac
gaagtttggggacaaaagcgcgagaaggaggaaaagaagaagcgcaaggatattactgac
accagaactggtggatctggtaatggaaacaatgatcgcaatcatcaccgcgataattct
acaaatggcgatgatcaaaaccaagagggcggacttagaagacgtggaagtttaagacaa
cgaccaactcaaaagaagaatgatgatgttgaagttgagggacagagtcttttacttgtc
gaagaagaagaggtcactgatgaacaaaagccactttacgctggtcacattgttgcagtc
attgaacgtgttgccggacaaatgttttccggtaccctgggtcttcttcgaccatccagt
caagctaccaaggaaaagcaagaagccgaacgtcaagctcgtgatggaaactcgggtcgt
catcaagagcaacgtcaacaagacaagccaaagattgtttggtttaaacctaccgataag
cgtgttccattgatcgccatccctactgaacaagcaccacgcgatttcgttgagaagcat
caagattatgctgatcgcatttttgttgcttgcatcaagagatggccaatcacctctctt
catccattcggtaccctcgttgaacaacttggtaagatgggtgaattaaaggttgagact
gatgctcttcttcgtgacaacaactttgcttctgatgagttttcagatgctgttacacgt
agcgttggtcttgatgattggtctttggagaaggaagatgaaacttccatctctacaaga
cgtgatttccgaaacgaaaagacctttaccattgacccaaatggtgccaatgaacttgac
gatgctattcacgtgaagactgaagcagatggaaagatcgaaattggtatccacattgct
gatgttgctcattttatcaaggcaaactctcttgtagatagagaggcacgcaaacgtgga
actgctgtttatttgatgaacagatcttgtgctatgttacctccaaagattgcctcggac
atttgctctttgacaccaggtcaagatcgtcttaccgtctcggttgtattcaaagttaac
gcccaaaccggtgctgttttcgaggatgagacttggattggaaagagtatcattaagagt
ggtggaaaattgacatacaaggatgtcgatgctgtcctttccggccaaaccgatgtaaaa
ctcgagggtgctgaagtaaaggatatccaaatcctcaacgctgttgctcaaaaattccgt
gaatctcgtcttggctctgatggagagactattgcaccattaagacttgtttatcagtta
gatgatgagaatgttccagtggaacaaaatatctttgattctaccccatctcatgaattg
attgaagaattgatgaacaaggtcaactcttatgtggcacaaaagatctaccaaggcctt
cctgaaaaggcactccttcgtcgacaaggtccaccaaatccaagacgtcttcaaacattt
gctgatcgcatgaacaagattggatatgaaattgatacttctagcagtggacgtcttcaa
aacagtcttttcaaagttgatgataccgacattcgcaagggaatggaaactcttttggtc
aagtccatgcaccgcgccaaatatttcattgctggaaagactcaaccacatctttaccct
cattatgccctcaacttaccattatacactcattttactaatccatcgcgtcgttatgcg
gacttggtggttcatcgtcaacttgaagctgttctttctgaaggcaagattgaatataat
gaggacatggagactctcgtcaagacaaccgagtcttgcaacgggaagaaggattcatct
caaaatgctcaagagcagagtgttcatatcgagtcatgtaggattatggatagaaagcgt
gaagaagctggtggtgaacttatcagtgagggtatcgttgtctgtgtttacgaatctgct
ttcgacgttttgattcctgagtttggctttgaaaagagagttcattgcgaccaacttcct
cttaagaaggccgaattcagaaagaatgagagagtacttgagttgtattgggagaagggt
gtaccatcatctgcatatgtaccagaagatgagcgtccaaaggctggtgcatctcaaaga
actaccaacgctgctgccgctgccaagcaagctgctgttgccgagagagccaagaaggag
catgaagaagctcaacgaaagacaaccgagactggtaccatctcgactgatgacgttgat
gctctattcgatgatgacgatgatgcttccgacattgctggcagtgttgctggtgtttcc
cttgctgaacgcccaactcaaagcgttccaccatcaccaaccaagaactcaatttcagct
gcaactagcctccacagaactcgttccgactcaaaggtaccaactggtgaacctgtcgaa
gccaagcttagtgctaaggaaaagtacttgaagtatttcacccttcgtgaagaggatggc
gaatacatccaagatgtcaaggaaatgacaagagttcctgttattttgaagactgatctt
acaaagagtccaccatgtctcacaattagatcgctcaacccttacgcactctaa
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