Brevibacterium flavum: C628_05295
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Entry
C628_05295 CDS
T04445
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bfv
Brevibacterium flavum
Pathway
bfv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C628_05295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfv03400
]
C628_05295
Enzymes [BR:
bfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C628_05295
DNA repair and recombination proteins [BR:
bfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C628_05295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ANR62037
LinkDB
All DBs
Position
1143886..1147539
Genome browser
AA seq
1217 aa
AA seq
DB search
MTPMLAGLLKVAATDPKLKGLMSNVGQQHLHITGIDQARPWAIGALAHHAPVLVVTATGR
EAEDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHLGDLKVVVAAARA
FCQPVLKDAEGRALLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFP
TTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVASRAESLI
SKHPGNPTLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELMPENTHVLVIAPEKVRR
RIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEVSASKSDVRWWTF
APPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTGGGRAAFIAPTQGAIKR
MVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDGAAMPLVVITETD
LTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGDETSR
REYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSDWKNAKKKARAAV
REIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP
MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK
GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH
IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYEDKQVAAS
IRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDRE
YDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGAT
LTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGE
AVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEIYRKLAQSESEVD
LRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDIAVQGTRIKVHPVDLADSQQV
RLKRLFPGATYRAAAKAIQLSFPKAGNKVTDPLLRDVDLLQWVANFISNMFNVEEIDVRG
PQPGKPKKKSSVISVSL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtgacacctatgctcgcggggctgttgaaggtcgctgcaaccgaccccaagttgaagggg
ttgatgtcgaatgtggggcagcagcatctgcatatcactggcattgatcaggctcgtccg
tgggcgattggtgcgttggcgcatcatgctccggtgttggtggtgactgctactggccgt
gaggctgaggatctcacggctgagttgaaggcgatgatgggcgataaggtggcgtggctt
ccgtcgtgggagactctgccacatgagcgattgagtccgggtgtggacattgtgggcaag
cgtgctcaggtgctcaatcatctaggcgacctcaaagtcgtggtggctgctgcgcgtgcg
ttttgccagccggtactcaaagatgctgaaggtcgtgcactcctcactcttaaagaaggc
gcggagtttgatttctctgccctgaccactgagctggttttccgtgcgtacaagcatgtc
gatatggtggccaagcgcggtgagtttgctacccgcggtggcattttggatattttcccc
accacattggattatccggtgcgtgtggagttctggggcgatgaagtctctgacatcagg
cagttctctgtcgccgatcagcgcaccattccagaaatcaccatcaagagcattgagatt
ttcccggcgcgtgaattgctcattactgaagaagtggcatcgcgtgcggagtctcttatt
tctaagcacccgggcaacccgacgcttgtggagatgctgtcgaggattgcggattcccaa
gatgttgatggcatggaggcgttgattccggcgctgacggatacgcccatggttccgatg
ctggagctcatgccggaaaacacccatgtgttggtgattgctccggagaaggtgcgccga
cgcattgcggatctggaagcaaccgatgctgagtttttgatggctggttgggaagcagct
gcgatgggtgctgatggtccagtggctgcggaaggcctggacttggaagcttctagctat
cgcagttatgaaagtttggaggtttctgcgtcgaaaagcgatgtgcgttggtggactttc
gcgccgccgggcatgtttgaggcctcggaggaggcgacgctgccgcttgattttgaagcc
gggccggcgccgcgcggtgagctgccgaagatcgatgcgatgatggcgcagctgcttgcg
cacacaaccggcggtgggcgggctgcgtttatcgcgccgacccaaggtgcgattaagcgc
atggtggatcgttttgcggaaaagggtattcctacccatgtggcgactccgggttgggag
ccaacgcctggtcaagtgacgctttatcatgcgctgagccatgctggcctggtgtttccg
aaggtgcgtaaacaccgcgatggcgctgcaatgccgttggtggttattacagaaaccgat
ctgactggtaaccgtgttggcgatattgcaggggcgaaacgtcgacctgcaaaacgccgc
aacaaggtggatcctttggcgctggagccaggggatttggtggttcatgaaacccacggc
attggtcgttttgtgaagatgactgaacgaaccatttctgcgggtgatgagacctcgcgc
cgtgaatacattgtgctggagtacgcgccatctaagcgcggacagcccggcgatcagctg
tatgtgccgatggatgcgctggatatgctcagccgctacgtcggtggcgagaagccgacg
ctgtccaaaatgggtggttctgactggaagaacgccaagaagaaggctcgcgctgccgtg
cgtgaaatcgccggtgagctggtagaactctacgctaagcgccaatccgcgccgggtcac
ccgtttgcgccggatacgccgtggcaaaaagagatggaagataacttcccctacgttgag
actgaagaccagatgctggcgatcgatgctgtcaaggaggatatggagaaaagtgtcccc
atggaccgcgtcatcatcggcgatgtgggttacggcaagacggaagtggcggtgcgcgcg
gcgttcaaggctgtgcaagacggcaaacaggtagccgttctggtgcccaccacgttgctt
gcgcagcagcaccagtccacgtttgaagagcgtatgactggtttccctgtcaccatcaag
ggattgtcacgctttacttcgcctgcggaatcgcgggagattctctccggtttggctgca
ggatcggtggatatcgtcatcggtactcaccgtttgctgcagactggcgtgcagtggaaa
aacctagggcttgtcattgtggatgaggagcagcgtttcggcgtggaacacaaggagcac
atcaaggctctgcgtactcacgtggatgtgctgaccatgtccgcgaccccgattccgcgc
accctggaaatgtccatggccggtatccgtgagatgaccaccatgcttaccccgccggaa
gatcgccacccaattcttacctatgtgggaccgtatgaggataagcaggtcgcggcatca
attcgccgcgagttgctgcgcgatggccaggtctttttcatccacaacaaggtggcagat
attgagaagaaggcccgcgagatccgcgatctagttcccgaagcccgagtggttgttgcc
cacggccagatgagtgaagagctgctggaacaaaccgttcaaggtttctgggaccgcgaa
tacgatgtgctggtgtgcaccaccatcgtggaaactggtctggatatttccaacgccaac
acgcttatcgtggaaaatgcccaccacatgggcttgtctcagctgcaccagctgcgtggc
cgcgtgggtcgttcccgtgagcgcggttacgcctacttcctgtatccaaagggcgcgacg
ctgaccgaaatgtcctacgatcgcctggcaacgattgcccaaaacaatgatttgggtgcc
ggtatggcggttgccatgaaggacttggaaatgcgtggcgccggcaacgtgctgggtgca
gaacaatcaggccatatcgctggcgtgggctttgacctgtacgttcgccttgttggtgaa
gctgtggaagcctaccgcgcgctggctgatggcaaagttgttgatggcaccgtcaaggga
ccaaaggaaatccgcgtggaccttcccgtggatgcccacattcccgaaaagtacatcaac
gccgagcgtctgcgtctggaaatctaccgcaagctcgcgcagtccgaatcggaagtggat
ctgcgccttgcggtggaagaaatggaagaccgctacggtcccattccagaagaagtggag
cgcctgctggctgtgtccagattgcgccacctcatgcgcgaagcccacctcaccgacatt
gcggtgcagggcactcgcatcaaggtccaccccgttgacctcgccgattcgcagcaagtg
cgcctaaagcgcctgttcccaggcgccacctaccgcgcagccgctaaagcaatccagctg
tctttcccgaaggcaggcaacaaggtcacagatcctttgcttcgcgacgtcgacctcctc
cagtgggtagcgaacttcatttccaacatgttcaacgtggaggaaatcgatgttcgcgga
ccacaaccaggaaagcctaagaagaaatcatcagtgatctccgtcagcctgtaa
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