Brevibacterium flavum: C628_11455
Help
Entry
C628_11455 CDS
T04445
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bfv
Brevibacterium flavum
Pathway
bfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C628_11455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfv03019
]
C628_11455
03009 Ribosome biogenesis [BR:
bfv03009
]
C628_11455
Enzymes [BR:
bfv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C628_11455
Messenger RNA biogenesis [BR:
bfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C628_11455
Ribosome biogenesis [BR:
bfv03009
]
Prokaryotic type
rRNA processing factors
C628_11455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Cytidylate_kin
PCB_OB
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ANR63211
LinkDB
All DBs
Position
complement(2461808..2464873)
Genome browser
AA seq
1021 aa
AA seq
DB search
MPNNKAVEAEISPSAVLAAEFDRDSLSEKTRVHQLAKRLGMVSKDVVVALDGIGLVKVAQ
SNLSKEEVEKLLDALSQPVLNAAPAAVPDVEPVEKIRRRVEKNVENEIHQIEEKVERELA
AVAQPTDFEAAAREEVTAELLEDIVPEITPAPVEAPVYTPIFVAPAVVPTENVQHTDDEQ
ARERTARKRRGRRGTGRGRGAEAETVTEVSEEASTSEVEEVNEPIGIKGSTRLEAQRRRR
TEMREENKKRRHVVSTQEFMERRESMERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFV
TSDAQMSMVGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWKAAGLGGRGRRIEQ
ALKAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLPGPERKRLKE
ILGRVVPAQGGTIIRTAAEGVSEENIAADVNRLHTLWEQIKERTAKEKKSRGSKPITMYE
EPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSVAPDLVSRVEHFDRADFDGKDAF
EAFDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDVNTGRYTGKGGGNLEETVTLNNI
EAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRLNEALENDRTRHQVSEVTSLGL
VQMTRKRIGAGLLETFSSPCEHCEGRGIIVHVDPVDTVDERVEAKAEERSRRHQRSNSTE
KAAAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLDDSDLDDVVNDKLDEPERILAES
TVEPEEGPRRRARRQRQESAADDIAAIAAAAVDIASEEDPDEPSGSSYVSDLEAEPIAPV
VEKAAEPVAEPTADYEKARAEFEASPRRRRKTRGNSRSDHAPKPEDFAPVVEEVAETPVK
TPARKAPRRNRPSELSSGAPSSAPLTRNRRRAVRRQLVEAPETVVEIAPEAAPEQVAEPQ
VEFDQPDNRRKRRRAVRVTAAPVEKKVASTSNARAPKKEPQAASTTNPGRRRRATRRGPR
S
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
gtgccaaataacaaggcagtagaagcagaaatctctccctcggctgtgctggccgcggaa
tttgatcgagattcattgagcgaaaaaactcgcgtacatcaactggccaaacgacttgga
atggtttccaaggacgtcgttgttgcgctcgatggcatcggcctggtcaaggttgcgcag
tcaaacctgagcaaagaagaagtagaaaagcttctcgacgccctgtctcagcccgtactc
aacgctgccccagctgccgtccccgacgttgaaccggtggagaagattcgtcgacgcgtt
gagaagaatgtggaaaatgaaatccaccaaatcgaagaaaaagtagagcgcgaactcgcg
gcagtcgcgcaacctaccgacttcgaggcggcagcccgcgaagaagtcactgcagaactg
ctggaagatatcgtcccagagatcaccccggcgccggtggaagcacctgtgtacacaccg
atctttgtggcacctgcagttgtacctactgaaaacgtccaacacaccgacgatgaacag
gcccgcgaacgcacggcgaggaagcgccgtgggcgtcgtggcaccggccgcggacgtgga
gctgaagctgaaaccgtcaccgaagtgagtgaggaggcgtcgacaagcgaagtagaagag
gtaaacgagccaatcggaattaagggctccactcgcttggaggcgcaacgccgccgtcgc
acggaaatgcgcgaagaaaacaaaaagcgccgccatgtggtgagcacccaggagttcatg
gaacgccgtgaatcgatggaacgtcgcatgattgtgcgcgagcgccaacgccacgatcac
ccaggtctggtcactcaggttggtgtgctggaagacgatcagctggttgagcagtttgtt
acctctgatgcgcagatgtccatggtgggcaatatttatctggggcgcgttcaaaatgtg
ctgccaagcatggaagctgccttcattgacattggaaaaggtcgcaacggtgtgttgtat
gccggcgaagttgactggaaagctgctggacttggcggacgtggacgtcgcattgagcag
gcgctgaaagccggcgaccaggttctcgtccaggtctccaaggatccattgggccataag
ggtgcgcgtttgaccacccaaatttccctggcgggacgttacctggtgtacgttccaggt
ggtcgcagcgctggcatttcccgcaaactgcctggacctgagcgcaagcgtctgaaggaa
atccttggccgcgttgtcccagcgcagggtggaaccatcatccgaactgctgctgaaggt
gtgtcggaagaaaacatcgcagctgacgtgaaccgtctgcacaccctgtgggagcagatc
aaggaacgcactgcgaaggaaaagaagtcccgcggttccaagccgatcaccatgtatgaa
gagccagacatgctggtgaaggtgatccgtgacctcttcaatgaagatttcacctcactg
atcgttgacggcgaccgtgcctggaacaccgtgcgtgcctacatccaatcagtcgctcct
gatttggtgtcccgcgtggaacacttcgatcgcgcagactttgacggcaaggatgctttc
gaagcattcgacctgaacacccagcttgaggaagcgctgtcccgaaaggtgaacctgcca
tcgggtggatcgctgatcatcgaccgcaccgaagccatgacggtgatcgatgtgaacacc
ggacgctacaccggcaagggtggtggcaacttggaagaaaccgtcacgctcaacaacatt
gaagctgccgaagaaatcgtgcgccaaatgcgcctgcgtgatctcggtggcatgatcgtt
gtcgacttcatcgatatggtgctgccagaaaaccaagaattggtcctgcgccgactcaat
gaagcgctagaaaacgatcgcacccgccaccaagtctctgaggtaacctcactgggactt
gttcagatgacccgcaaacgcatcggcgcgggcctgctggaaaccttctcttcaccgtgt
gagcactgtgaaggccgaggcatcatcgttcatgttgatccagtagacaccgttgacgag
cgcgttgaggcgaaagcggaagagcgtagccgtcgtcaccagcgttccaatagcactgag
aaggcagctgcggagcacccgatggttgttgccatgcgtgatctcgtggaaagcgatgaa
cacgatctggatcaagaatttgaggaactcgctgcatcagtgatcgtcctcgatgactcc
gatctagatgatgtggtcaacgacaagctcgacgagcctgagcgcattcttgctgaatcc
accgtggaaccagaggaaggaccacgcaggagggcccgccgtcaacgtcaggaatctgct
gcggatgatattgccgcgattgcagctgctgccgtggacattgcttctgaagaagaccct
gatgagccttcgggatcgtcgtatgtgtctgaccttgaggcagagcctattgcacctgta
gttgagaaggctgctgaacctgtggctgagccaaccgctgattatgaaaaggcacgtgcc
gaatttgaggcaagcccacgcaggcgccgcaagactcgtggcaattcacgttcggatcat
gctccaaagccagaggatttcgcacctgtggttgaagaggttgctgagactccagtgaag
acacctgcgcggaaggctccacgccgtaaccgtccaagtgagctcagttccggtgcgccg
tcctctgcaccattgaccaggaaccgtcgccgcgcagtgcgccgtcaactggtggaagct
cctgagaccgtcgttgagatagcacctgaagcagcaccagaacaggttgcagagcctcag
gttgaattcgaccagccagacaaccgccgaaagcgtcgtcgtgctgtgcgcgtgacagcg
gcgccggtggagaagaaggtggcgtcgacaagcaatgcgcgggcgccgaagaaggaacct
caggcggcgagcaccaccaacccaggccgccgtaggcgggctacccgacgaggcccacga
agctag
DBGET
integrated database retrieval system
