Buchananella felis: ABYF36_05775
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Entry
ABYF36_05775 CDS
T10900
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bfy Buchananella felis
Pathway
bfy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABYF36_05775 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfy03400
]
ABYF36_05775 (mfd)
Enzymes [BR:
bfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABYF36_05775 (mfd)
DNA repair and recombination proteins [BR:
bfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABYF36_05775 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
XEO16760
LinkDB
All DBs
Position
1510142..1513873
Genome browser
AA seq
1243 aa
AA seq
DB search
MRLSGLLPLLLTDPVFAAVQEAAPGRGERTFSLPLAPRGALLAALSEQRPLTVLTATTRE
AEDLAAAIRDHLGAAQAGTVAVFPAWETLPHEKLSPRADTMAKRAAIARRLAHPIEGDAH
AGPIRVLLAPVRAAAAPLVGGLGEREPLHLRVGDEMPLEEVVARLSAGGYARVDMVERRG
EFAVRGGILDVFVPTDAHPLRVEFFGDEVDEIRAFTVADQRSIAPAPAALEVDDAAARPT
KKAASPLSAPPAQGSPGAAADASGAVGAARAGKAPLQLWAPPCREIPLTAEVRERAAKLV
SKLPGAAELLERIADGQTPEGMEALTPALVDQLVPLLSLVDAQSLVLLHEPERIRRRVED
LLATTDEFLAAAWHSAAAGGGMPIDLRRASFLALPAIRSLALERGLGWWQLTSLRPMELD
ESGAAPAPDPAGESDADGATEGGAGGTALTELSPYRGNIPQLFTDVSRWLRQGRRVVVTT
QGPGMARRFREQFAAAELPARVVDAIAQAPEPGSLTITTASQLAGYHAPAAALTVIGEAD
VTGKAAREQSRDKAVPARRRNAVDPLQLQAGDYVVHEVHGVGRFIELISRNVGHGAKAGR
REYLVIEYAPSKRGQPGDRLFVPTDSLDLVTKYTGGEAPALSKMGGADWAKTKGKARAAV
KDIAKELLRLYAARMATKGHAFSPDTPWQRELEESFAFVETPDQLATMDEIKADMEREVP
MDRLLCGDVGYGKTELAVRAAFKAVQDGKQVAVLVPTTLLVSQHLETFTSRYENFPVRVA
ALSRFQSEKEAQEVKEATRKGEVDVLIGTHRLLTGEVRFKDLGLVIIDEEQRFGVEHKET
LKALRANVDVLAMSATPIPRTLEMAVTGIREMSTLTTPPEDRHPVLTYVGGYEDRQVAAA
IRRELLRDGQVFFVHNRVQSIQDTAAKLAKLVPEARIAVAHGQMGEQQLERVIEDFWNQE
FDVLVCTTIVETGLDISNANTLIVDRANAFGLSQLHQLRGRVGRSRERAYAYFLYPTHTP
LTETAHERLRTIAAHTDLGSGMHVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVAD
AVAQYRGDKSPVEEEVRLDLPVDAHVPTSYVEHDRLRLEIYTKISAARTEVDLRAITEEL
TDRYGALPEPVVRLLELARLRATARELGLSELVAVGKQVRLAPLEVPDSLQLRLKRLYPG
SSVKPAVRAVTVPMPRGTGLGAAPLEDDALLEWVGNLLRAIKA
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
gtgagactttccggactgctgccactgctgctaaccgaccccgtcttcgccgccgtccag
gaggccgcgccggggcggggggagcgcaccttctccctcccgctggccccgcgtggcgcg
ctgctggccgcgctgagcgagcagcgtccgctcacggtgctgacggccaccacgcgggag
gcggaggacctggccgccgccatccgcgatcacctgggcgcagcgcaggccggcacggtg
gcggtcttcccggcgtgggagacgctgccgcacgagaagctctcgccacgcgcggacacg
atggctaagcgcgccgcgatcgcccgccgccttgcccacccgatcgagggggacgcgcac
gccggcccgatccgcgtgctgcttgcccccgtgcgcgccgcggccgccccgctggtgggc
gggctgggggagcgcgagccgctgcacctgcgtgtgggcgacgagatgccgctggaggag
gtggtggcgcgcctgtccgccggtggttatgcccgcgtggacatggtggagcggcgcggc
gagttcgcggtgcgcggcggcatcctggacgtctttgtgcccaccgatgcccacccgctg
cgggtggagttcttcggcgacgaggtcgatgagattcgcgccttcaccgttgccgaccag
cgttccatcgcgcccgcccccgccgccttggaggtggacgacgctgccgcccggcccacg
aagaaggcggcctctccgctgtcggcgcccccggcgcagggctccccgggcgccgcggcc
gatgcgtcgggggccgtcggcgcggcgcgggccggcaaggcgcccctgcagctgtgggcc
ccgccctgccgggagatccccctcactgccgaggtgcgcgagcgcgccgcgaagctggtc
tccaagctgcccggtgcggccgagctgctggagcggatcgcggatgggcagaccccggag
ggaatggaggccctcaccccggcgctggtggaccagctggtgccgctgctgtccctggtg
gatgcgcagagcctggtgctcctgcacgagccggagcgcatccgccgccgcgtggaagac
ctgctggccaccacggacgagttcctggcggccgcgtggcactcggccgctgcgggcggc
ggcatgcccatcgacctgcgccgcgcctccttcctggccctgcccgccatccgctccctg
gccctggagcggggcctgggctggtggcagctgacctcgctgcggcccatggaactggac
gagtccggcgcggccccggcgcccgacccggcgggggagagcgacgccgatggtgccacg
gagggcggcgcgggaggcaccgcgctgacggagctcagcccctaccgaggcaacatcccc
cagcttttcacggacgtttcacgctggctgcgccaggggcgccgcgtggtcgtcaccacc
caaggccccggcatggcccgacgcttccgggagcagttcgccgctgcagagctgcccgcc
cgggtcgtggacgccatcgcgcaggcccccgagcccggcagcctcaccatcaccaccgcc
tcccagctcgccggctaccacgcccccgccgccgccctcaccgtcatcggcgaggccgac
gtcaccggcaaggccgcgcgcgagcaatccagggacaaggccgtgcccgcccggcgccgc
aacgccgtagacccgctgcaactgcaggccggcgactacgtcgtccacgaagtccacggg
gtggggcgcttcatcgaactgatctcgcggaacgtcggccacggtgccaaggccgggcgg
cgcgaatatctagtaatcgaatacgcgccctccaagcgcggccaaccgggcgaccgccta
ttcgtccccaccgactccctggacctggtcaccaagtacaccggcggagaggccccggcg
ctatccaagatgggcggcgccgactgggccaagaccaagggaaaggcgcgcgcggccgtc
aaggacatcgccaaggagctgctgcgcctctacgccgcccgcatggccaccaagggccac
gccttctccccggacacgccgtggcagcgcgaactggaggaatccttcgcgttcgtggag
acccccgaccagctggccaccatggacgagatcaaggcggacatggaacgcgaggtgccg
atggatcggctgctgtgcggggacgtcggctacggcaagaccgagctggcggtgcgcgcc
gcgttcaaggccgtccaggacggcaagcaggtggcggtgctggtgccgaccacgctgctg
gtcagccagcaccttgagaccttcacctcccggtatgagaacttcccggtccgcgtggcc
gccctctcccgtttccagagcgagaaggaagcccaggaggtcaaggaggccactcgtaag
ggggaggtggacgtgctgatcggcacccaccgcctgctcaccggagaggtgcgcttcaag
gacctgggcctggtcatcatcgacgaggagcagcgcttcggcgtggaacacaaggagacc
ctcaaggccctgcgcgccaacgtggacgtgctggccatgagcgccaccccgattccccgc
accctcgagatggccgtgaccggcatccgcgagatgtccaccctcaccaccccgcccgag
gaccgccacccggtgctgacctacgtgggcggctacgaggaccggcaggtggccgccgcc
atccgccgcgagctgctgcgcgacggccaggtgttctttgtgcacaaccgcgtccagtcc
atccaggacaccgccgccaagctggccaagctggttcccgaggcccgcatcgcggtggcc
cacggccagatgggcgagcagcagctggagcgcgtgatcgaggacttctggaaccaggag
ttcgacgtgctggtgtgcaccaccatcgtggagacgggcctggacatctccaacgccaac
acgctgatcgtggaccgggccaacgccttcgggctctcgcagctccaccagctgcgcggg
cgggtggggcgctcgcgggagcgggcctacgcctacttcctctaccccacccacactccg
ctcaccgagaccgcccatgagcgcctgcgcaccatcgccgcgcacaccgacctgggcagc
ggcatgcacgtggccatgaaggatctggagattcgcggcgccggtaacctgctgggcggg
gagcagtccggccacatcgccggggtgggcttcgacctctacgtgcggatggtggcagac
gccgtggcccagtaccggggagacaagagcccggtggaagaggaggtgcgcctggacctg
cccgtggacgcccacgtgcccacctcgtacgtggagcacgaccggctgcgcctggagatc
tacacgaagatctccgccgcccgcaccgaggtggacctgcgcgcgatcaccgaggagctc
accgaccgctacggcgccctgcccgagccggtggtgcgcctgctggaactggcccgtctg
cgcgccaccgcgcgggagctggggctgagcgagctggtggccgtgggcaagcaggtgcgc
ctggcgccgctggaggtgcccgactcgctgcagctgcggctcaaacgcctctacccgggc
tcctccgtgaagcccgccgtgcgcgccgtgaccgtgcccatgccgcgcggcaccggcctg
ggggccgcgcccctggaggacgacgccctgctggaatgggtggggaacctgttgcgcgcg
atcaaggcgtag
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