Bordetella flabilis: BAU07_18310
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Entry
BAU07_18310 CDS
T04592
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bfz
Bordetella flabilis
Pathway
bfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAU07_18310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfz03019
]
BAU07_18310
03009 Ribosome biogenesis [BR:
bfz03009
]
BAU07_18310
Enzymes [BR:
bfz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BAU07_18310
Messenger RNA biogenesis [BR:
bfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAU07_18310
Ribosome biogenesis [BR:
bfz03009
]
Prokaryotic type
rRNA processing factors
BAU07_18310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ANN78812
UniProt:
A0A193GFH9
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All DBs
Position
4152216..4155413
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AA seq
1065 aa
AA seq
DB search
MKRMLFNATHPEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGIITRIEPGLEACFVNY
GEDRHGFLPFKEIARTYFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLQLPPGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDVPLFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVAV
DVNSARSTRGADIEETALRTNQEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEEMKTSFELADAPATEVAWAPREQEIKSRPEALVKGITPEQPAPVSS
TPPVAPVAATPAVASTGLGGLFKRMVGWLTGDGATPAATPAPAPQADSKRSTTRPKSRTH
DGQDRRGERHGSDRNRNRRSENRPEAAEGDAPRHHVRGGRRNETDRAERGERPARAEGQQ
RAERDAVAQAQAHPERALAPESADEAAPARTGRGRRGRSGRGRREDGQSDAPMSEQESMV
AALAETVAAALPPESDDERLDTSVEAGPVELDEHGQPIATEAGADPERKRRRRRSRRGRR
AQEEGGTVSADAGQDEAMDGEDNLAAEAQAALSEVATPVSEGREHPAPVAQPEPSPARPA
GHGTVTAAPGAPAGFTEEDTPAVSGAPTATQAQPFAAQPAPFTGVSAPSVRPEPVQAGTA
AEDTAPRFAESAPAQAAPAAPVPAQAAPAQEGTQAAAAEAAPVSPWPAVPQSPASETAPV
PTPVRAADEGVPHAAPAVPAAPAGAAPVTQDAAPQAAPAVPRAPQQSLQDVVNAAGLTWV
ETDPQRHAQTQQRMAASATPVRLGRERKPVAPVSREPLVQVETRH
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgttcaacgcaacgcacccagaagagttgcgcgttgccattgtcgat
gggcaaaagctcatcgatctggacatcgaaaccgccggacgcgagcagcgtaaaggcaac
atctacaaaggcatcatcacccgcatcgaacccggcctggaagcctgcttcgtcaactac
ggcgaagaccgccacggtttcctgccgttcaaggaaattgcccgcacgtatttcaaggaa
ggcgtcgacgtccgtaccgcccgcatccaggatgcgctgcgcgaaggacaggaactgatc
gtccaggtggaaaaggaagaacgcggcaacaaaggcgcggctctcaccaccttcatctcg
ctggccggccgctatctggtgctgatgccgaacaacccacgcggcggcggcgtctcgcgc
cgggtggaaggcgaagaccggcaggaactgcgcgacaccatggagcagttgcaactgccg
ccgggcatgagcatcatcgctcgcacggccggtatcggccgcaacgtggaagagctgcag
tgggatctttcctatctgctgcaactgtggaccgccatcgacggcgccgcccgcgacaac
tccgcgccaatcctgatctatctcgagtcgagcctggtcattcgtgccatccgcgactac
ttctcgcctgaaatcggcgagatcctgatcgataccgacgaaatcgccgaccaggccacc
gccttcatgagcgtggtcatgccggacaacgtgcagcgggtcaagcgctatcgcgacgac
gtgccgctgttctcccggttccagatcgaacaccagatcgaaacggcgtactcccgtacc
gtcaccctgccttccggcggcgccatcgtcatcgaccataccgaagcactggttgccgtc
gacgtgaactcggcccgctcgacccgtggcgccgacatcgaggaaaccgccctgcgcacc
aaccaggaggcagccgacgaagtggcgcgccaactgcggctgcgcgacctgggtggcctc
atcgtgatcgacttcatcgacatggaggacagcaagaaccagcgcgccgtggaacagcgt
ctgcgtgatgcgctgcatttcgatcgcgcccgcgtccagatgggcaagatttcccgtttc
ggcctgatggaactgtcgcgccagcgcctgcgtccggccctgaacgaaggctcgcacatc
acctgcccgcgctgtaacggcaccggcgtgatccgcgatgcggaatccagcgccctgcac
gtcctgcgcctgctgcaggaagaggcgatgaaggagaacacggcggcggtgcatgcccag
gtaccggtcgatgtcgccaccttcctgctgaacgagaagcgcgccgatatcgccaagatg
gaagcccgcctgaaggtcaacctggtgctgatcccgaacaagcacctggaaacgccgcac
caccacatcgaacgcctgcgccacgacgacccgcgcctggaagagatgaagaccagtttc
gaactggccgatgcaccggccaccgaagtggcttgggcgccgcgcgagcaggaaatcaag
agccgccccgaggccctggtgaaaggcattacgcctgagcaaccggcaccggtgtcgagc
acgccgcccgtcgccccggtggcggcgaccccggcggtcgcatcgaccggcctgggcggc
ctgttcaagcgcatggtcggctggcttaccggagacggcgccacccccgccgccacgccg
gcccccgccccccaggcggacagcaagcgctccaccacccgtccgaagtcgcgtacgcac
gatggacaggaccgccgtggcgagcgccatggctccgaccgcaaccgtaaccgccgctcc
gagaaccggccggaagccgccgaaggggacgcgccgcgccatcacgtgcgaggcggccgc
cgcaacgagacagaccgcgcggaacgaggtgagcgccccgcgcgcgccgaagggcaacaa
cgcgccgagcgcgacgccgtcgcccaggcccaggcccatccggaacgcgccctggcgccg
gaatccgccgacgaggcggcaccggcccgtaccgggcgtggtcgccgcggacgcagcggg
cgaggccgccgcgaagatgggcagtccgatgcaccgatgagcgagcaggaaagcatggtc
gccgccctggcggagacggtcgccgcggcgctgccacccgagtccgacgacgaacgcctg
gataccagcgtggaagcaggccccgtggagttggacgaacacggccagcccatcgcgacg
gaagccggcgccgatccggaacgcaagcgtcgccgtcgtcgtagtcgccgtggccgccgc
gcgcaggaagaaggcggcactgtgtctgccgacgccggtcaggacgaagccatggacggc
gaggacaacctggccgccgaggcccaggccgccctgtcggaagttgccacgcccgtcagc
gaaggccgggaacatcccgcgcccgtcgcacaaccggagccgtcgccggcacgaccggcc
ggacacggtaccgtaacggccgcaccgggcgccccggcgggattcacggaagaagacacc
ccggccgtttccggcgccccgaccgcgacgcaggcccagcccttcgccgcccagccggcg
cctttcaccggggtgtcggccccatcggtacgtcccgagcctgtccaggccgggaccgcg
gccgaggacaccgcgcctcggttcgccgagtccgcaccggcgcaagcggcgcccgccgcg
ccagtcccggctcaggcggcgcctgcccaggaaggcacccaagccgccgctgccgaagcc
gcacccgtgtcgccgtggccggctgtcccgcagtcgcctgcgtcggaaactgcccctgtc
cccaccccggtgcgggcagcggacgaaggcgtgccgcatgccgccccggcggtccctgcg
gcaccggccggcgcagcgccggtgacgcaggacgcggctcctcaggccgctcccgccgtg
ccgcgggctccgcaacaaagcctgcaggacgtcgtcaacgccgccggcctgacctgggtc
gaaacggatccgcagcgccacgcgcagacgcagcagcgcatggccgccagcgcaacgccc
gtgcgactgggtcgcgagcgcaagcccgtggcgccggtgtcgcgcgaaccgctggtacag
gtggaaacgcggcactga
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