Borrelia garinii subsp. bavariensis: BG0852
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Entry
BG0852 CDS
T00194
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
bga
Borrelia garinii subsp. bavariensis
Brite
KEGG Orthology (KO) [BR:
bga00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BG0852 (hrpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bga03041
]
BG0852 (hrpA)
Enzymes [BR:
bga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BG0852 (hrpA)
Spliceosome [BR:
bga03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
BG0852 (hrpA)
Complex C
U4/U6.U5 tri-SnRNP related factors
BG0852 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_N
AAA_22
ResIII
AAA_19
nSTAND3
Helicase_RecD
Flavi_DEAD
TMEM43
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAU07674
UniProt:
A0A7I6GX41
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All DBs
Position
complement(872044..874518)
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AA seq
824 aa
AA seq
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MNDFKLPIYKYKDELIKVLKKNNVLIIESPTGSGKTTQLPRIIYEAGFAKLGKIGVTQPR
RIATISIAEYIAKHIGVNLGEEVGYKIRFEEITSPKTKIKLMTDGVLLQELKKDTLLYEY
DVIIIDEAHERSLNIDFILGLIKDISRKRDDFKIIISSATINTKIFSKYFNNAPVVSIET
IAYPVQIIYNPPLLNTSKGMILKIKEIVSNVIKEKKPGDILIFLSGEKEIKETIKELQEL
NSKKKLIICPLYGRMPKEAQEQIFVATPKNKRKIIVSTNIAETSITIENIKIVIDSGKVK
TNKFQTKTHTYSLQEVPISKSSATQRAGRAGRLSKGTCYRLYKREDYQLREDYQKEEIYR
TDLSEVILRMADIGIRDFTHFDFISKPSKHSIQTASKILKSLDAINNKNELTEIGKYMIL
FPLVPAHSRALVEAMINYPQAIYQTTIGLSFLSTSGIFLLPQNEEMEARQAHLKYKNPMG
DLIGFINIFEDFKKAANKEAFTKENYLDLKGLEEIVNVQMQLENIVSKLNIPIIQKGALD
NEGYLKSIMRGMRDYICFKTSKKKYKTIKAQNVIIHPGSLISTDSVKYFVAGEIIETTKM
YARSIGVLKKEWIDDLSLNEEFQHKTMHDNKESQITNAKQTKIINEIKIGKKIFKAEFKN
NIYVIKISLEALKEMISKNELNTQNNEDLKKIKIQLIHKNVTVFSNKKFLETIEIIKGMG
KNWHCIKKYETNDVSIDEPEKMKNLLESTMQFISSPSKKVALFLSLETDHLGNFRLKPKQ
NFIMAIEESMESIKSLIENEEYIQKLHFIKKLINKVYKKLNYFF
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatttcaaactcccaatttataaatacaaagatgaattaattaaagtattaaaa
aaaaataatgttttaattattgaaagtccaacaggcagtggaaaaaccactcaactgcca
agaataatatatgaagcgggttttgcaaaattaggaaaaattggagtaactcaaccaaga
agaatagccacaatatcaatagctgaatatattgccaagcatattggtgtaaaccttgga
gaagaagttggttacaaaataaggtttgaagaaattacaagtccaaaaaccaaaatcaaa
ttaatgactgatggagtgttactgcaagagttaaaaaaagatacattgctttatgaatat
gacgtaatcataatagacgaagcacacgaacgaagtttaaacatcgattttatattaggt
cttattaaagacatttcaagaaaaagagacgattttaaaatcatcatttcatctgctaca
ataaacacaaaaatattttcaaaatatttcaacaatgcaccagttgttagcattgaaact
attgcgtacccagtacaaataatatacaatcctcctcttttaaacacatcaaaaggaatg
atattaaaaataaaagaaattgtctcaaacgtaataaaagaaaaaaaaccaggagatatt
cttatatttttatctggagagaaagaaataaaagaaactataaaagaactacaagaatta
aactcaaaaaaaaaattaataatatgccctttatacggtcgaatgcctaaagaagctcaa
gagcaaatatttgtagctactcctaaaaataaaagaaaaataatagtgtcaacaaacatt
gcagaaacttcaatcacaattgaaaatattaaaatagtaatcgatagcggaaaagttaaa
acaaataaattccaaacaaaaactcatacctattcgcttcaagaagttccaatttcaaaa
tcatcagcaactcaaagagccggtcgagcaggaagactttcaaaaggaacttgctacaga
ctttataaaagagaagattatcaactaagagaagattatcaaaaagaagaaatatataga
acagacctatctgaggtaatactaagaatggcagatattggaatcagagattttactcac
tttgattttatatcaaaaccatcaaagcattcgattcaaaccgcaagcaaaatattgaaa
tctctagatgccataaacaataaaaacgaacttacagaaattggaaaatatatgatacta
ttcccattagtgccagcacattcaagagcattagttgaagcaatgataaattacccacag
gcaatctatcaaactacaataggtctgtcatttttgtctacaagtggtatttttttacta
ccccaaaatgaagagatggaagccagacaagctcacttaaaatataaaaatccaatggga
gatttaattgggtttattaatatctttgaagattttaaaaaagctgcaaataaagaggct
ttcaccaaggaaaattatttagatctaaaaggacttgaagaaatagtaaatgtgcaaatg
caacttgaaaacattgttagcaaattaaatataccaataatacaaaaaggtgctcttgat
aacgaaggatatttaaaatcaataatgcggggaatgagagattatatttgctttaaaact
tcaaaaaagaaatataaaaccatcaaagcccaaaacgtaataattcatcccggatcactt
attagtaccgattctgttaaatattttgttgcaggagaaattatagaaactacaaaaatg
tatgcaagatccattggcgtcttaaaaaaagaatggattgatgatcttagccttaatgaa
gagtttcaacataaaaccatgcacgacaacaaagagagccaaataacaaatgccaaacaa
acaaaaattatcaatgaaatcaaaatagggaaaaaaattttcaaagcagagttcaaaaat
aacatctatgtaataaaaattagcctagaagcactaaaagaaatgatttcaaaaaacgaa
ttaaatactcaaaataatgaagatttgaaaaaaattaaaatacaattgatacataaaaat
gtaacagttttcagtaataaaaaatttttagaaactatagaaataataaaaggcatggga
aaaaattggcattgtataaaaaaatatgaaacaaacgatgtaagcattgacgaacctgaa
aagatgaaaaatcttttagagagcacaatgcagtttataagctctccctcaaaaaaagtt
gctctttttttatcattggaaacagatcacttgggaaattttagactaaagcccaaacaa
aattttataatggcaatagaagaatctatggaaagcataaaaagtctgatagaaaacgaa
gaatacatacaaaagctacattttataaagaaattaataaataaagtttacaaaaaatta
aattactttttttaa
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