Bufo gargarizans (Asiatic toad): 122920333
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Entry
122920333 CDS
T07965
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122920333 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122920333 (EDC4)
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122920333 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
122920333 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
WD40_WDHD1_1st
Beta-prop_HPS5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
CelTOS
ApoLp-III
DUF445
EIF3I
TPR_Sec16
ARM_ECM29_C
OSCP
Motif
Other DBs
NCBI-GeneID:
122920333
NCBI-ProteinID:
XP_044125695
LinkDB
All DBs
Position
10:86967951..87066576
Genome browser
AA seq
1360 aa
AA seq
DB search
MMASASNIDVDATQHLRDILKLDRLGDPVNESTGSRKSSSFNGELNGFICDPVAHPEATS
VDGPLLDSSLQDVEMPFSDKQVICLSGGDSPPCIEIVGKDVEIVASSDSNICSKARGSNK
VKIQPVAKYDWEQKYYNGNLIAVSNDYLAYATRGSNGTAMIRVLSITTAERILLKGITGS
VTDLAFAHLNSDQLACLDEAGSLFVWKLTMQNGKIIDEIFVHIKRPDPIPLNCNRRIIWC
PYIPDENEDNLSEDSSQTIALLHEDMAEVWDLDIIRANHSSWPTLISDIKEGYISVNGHS
GCLSEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWKPHNGRPVSCLLFCDNH
KKQDPDVPFWRFLITGADQNRQIKMWCTVSWTCLQTIRFSPDPFSSSVLPGLKASLDLSA
EFLILTDVHRKVLYVMELQQNQEDGKAAFTSISEFLLTHPVLSFGIQDVSRCRFQHTEVL
PSEVESDNVSEDDNLEMDEEDSAVLIKLFCVHTKALQDVQIRFKPHQGPSTETAALSSRD
RHDGLATPDQIIDLGTEICPVSESHHELLPDSLRASADFLLMPTDSKPKLMTPDAFMMPS
VTVQQMVSTSTSLGSLTSVTTLNNISSSDTSLSRSVDELTLSPKLKMENSLTGCMSGSSS
GSFQASSRTPAVLIPGLSDSLTPKPLVQVSSPNLPIELQSLEPLVVPQSSPTRERSPDVI
SSASTVISQDMPEIASESLQRSYPSTISVVQEENCASNHAPSMSSAASALQLLSTRSRNT
SELGLRPLEFPSSMADSELVSAPGLENSKLKDQMEEVISQPWPAAPDITRETNNSLIESD
RDDEVATFAASLNSFGGKGQSPRLLVKDWNTQGSPRCSPKPYKKCIKDDIDLPLSPKLAE
NHANFEHGELMSLLYMQQRELSELRQNQIELMQRLTDHLDAVQSSIMGHMERVTDAQQQQ
EQRRLDRILNDGQQRSGQLQEYLSQQLSHSLSGSLCNRLDKTVREEFKKSIPQCISKSLD
PVTAQLSSTIAAKLTSIEGSLKENISKMVKSKNITDAIGRAVADALHVPIHTTYREAFQN
TVLPAFEKGCQSMFQQINSSFKQGTQEYMQQLETHLKTKKENEQEMREPLVTQLQQLLDS
LQTTTDQLSSSLSGNVRSEVQQQLHVAVATMQDSILSQVQRIIKEEVNHAMKEQQAAVTS
SIMHAMRSAAGTPIPSSHLDYQSQQTHIMQLLQQGHLNQAFQQALTASDLNLILYVCETV
DSQQVFGQHPCPLTQPVLLSLIQQLSFDLCTRTELKLNYLEEAVMHLDHNDPVTRDHMGS
IVGQVRQKLFQFLQVEPHTSLQKSARRLMIMLQGIVPSIN
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttcggcttctaacattgacgtagacgccactcagcacctgagggacattctg
aagctggaccgccttggagatcctgtaaatgaaagtaccggtagtcgaaagtcaagttct
ttcaatggagagctgaatggcttcatctgtgatcctgtagcacacccagaggccacaagt
gtggatgggcctttgctggacagttctctccaggacgttgagatgccgttctctgacaag
caagtgatttgcttgtctggaggtgactctcctccctgcattgagattgttgggaaagat
gtcgaaattgtggccagtagtgattctaatatttgtagcaaagcaagaggaagcaataag
gtgaaaatacagcccgtggcaaaatatgactgggaacagaagtactacaatggaaatttg
attgcggtgtctaatgactaccttgcatatgctacaagaggttccaatgggacagctatg
ataagagtcctcagcatcaccacagcagagcggattttactaaaagggattactggtagt
gtcacagacctggcgtttgctcacctcaactccgaccagctggcatgtctggatgaagca
ggaagcctctttgtatggaaactcaccatgcagaatggcaaaataatagacgaaattttt
gttcacataaaaagaccagacccaattccgttaaattgtaatcgacggataatctggtgc
ccctacattcctgacgagaacgaggataatttgtcagaggattctagccagactattgca
ttattgcatgaagatatggctgaagtctgggatctggacatcatcagagcaaaccatagc
tcctggcctactcttattagtgatatcaaggaaggatacatatctgtgaacggacattct
ggttgtttaagtgaaggagctctgtctcctgatggtacagttttggcaactgctagtcat
gatggttacgtgaagttctggcagatttatattgaggggcaagatcaaccaaggtgtctc
cacgagtggaagcctcacaatggacggcctgtgtcttgtctgctgttctgcgacaaccat
aagaaacaagatcccgatgttcccttttggaggtttctcatcacaggggctgaccagaac
agacaaattaagatgtggtgcacagtttcttggacgtgcctacagacaatccggttttct
ccagacccattcagctcgagtgtcctgccaggattaaaagcttctctagatttatctgca
gagtttctcatacttactgatgtccacagaaaagttttatacgtaatggagttacaacag
aatcaagaagatggaaaggctgcttttacctccatttcagagtttttgcttactcacccc
gttttgagttttggaatccaggatgtgagccgttgccgttttcaacatacagaagttctt
ccttcagaagtagagagcgacaatgtcagtgaagacgataacctggaaatggatgaagaa
gactcagcggttcttataaagctcttttgtgtacacaccaaggctttgcaggatgttcag
atcagatttaaaccgcaccagggcccatcaacagaaacagctgccctgtcttcaagagac
agacatgatggtcttgctactcctgatcagataatagatcttggaactgaaatatgtccg
gtttcagaatcccatcatgaacttctgcccgatagtctaagagcctccgcggactttctg
ttgatgccaacagactcgaaacctaaactgatgactcctgatgctttcatgatgcccagt
gttacagttcagcagatggtctccacttctacaagccttggttcactcacctctgttact
acactaaataatatctcaagcagcgatacgtctctctccaggtctgttgatgaacttaca
ctcagtccaaagctaaaaatggagaatagcctaactggttgtatgagtggatcaagtagt
ggaagctttcaagcatcttcaagaacccctgcagtgcttattcccggactgtctgactca
ctaacacctaaacctcttgttcaggtttcttcacctaaccttcccatagaactccagagt
ttggaacccttggtggtaccacagtcttccccgactcgtgaacgatctcctgatgtgata
tcaagcgcttccacagtcatatcccaagatatgccagaaattgcttctgagtcactgcaa
agaagttatccgtcaactatatctgttgtccaagaagagaattgtgcatccaaccatgcc
ccaagcatgagctctgccgcttctgcacttcagcttttatcgacgcgtagccgcaacaca
tccgagcttggactacggccgctggagtttccctcttccatggctgatagtgagcttgtt
agtgcaccaggtctagaaaattcaaagcttaaggatcagatggaggaagttatttcccag
ccgtggccagcagcacctgatataacgcgagaaaccaataacagcttaatagaaagtgac
cgcgatgatgaagtggccacatttgcagccagcctaaatagttttggaggaaagggacag
agtccacgtctgcttgtgaaggactggaacacccaaggatcgccacgttgttccccaaaa
ccctacaagaagtgcatcaaagatgacatagacctaccattgtctccaaaattggctgaa
aaccatgcgaacttcgaacatggggaactgatgtctcttctgtacatgcaacaaagggaa
ctttcagagctgcgtcaaaaccagattgagcttatgcaaagactgactgatcatttggat
gcagttcagagctctatcatgggccatatggaacgtgtgactgatgcgcaacagcagcaa
gaacaaaggagattagacagaatactaaatgacggacagcaaagaagtggtcagctacaa
gagtacctttcacagcaactttcccattctctttctggttcactctgcaatagacttgac
aaaacagtccgtgaagagtttaagaagtccattcctcagtgcatcagtaagagcttggat
ccagtgactgcgcagcttagcagcacaattgcagcaaaactgacttctattgagggatca
ctaaaggaaaacatttccaagatggttaaatccaagaacattacagatgctataggccga
gcagttgctgatgcacttcatgtacccatccatacaacttacagagaagccttccagaac
actgtacttccagcttttgagaagggttgtcagtctatgttccagcaaataaacagcagt
ttcaagcaaggcacccaagagtatatgcagcaattggaaactcatcttaagacaaaaaaa
gaaaatgaacaagaaatgagggagcccctggtgacacaactacagcaactactagattct
ctccagacaacgacggaccagctgtcttcaagcctgagtgggaatgtgagatctgaagtg
cagcagcaattacatgtagctgtagcaactatgcaagactccatcttatcacaggttcaa
agaatcatcaaagaagaagtgaaccatgcaatgaaggaacagcaagccgcggttacctcc
agcattatgcatgccatgagatctgctgcagggacacctattccttcttcccatctcgac
tatcagtctcaacagacacacatcatgcagctacttcagcaaggccaccttaaccaagct
tttcaacaggccctaacagcttcagacctgaacttgatcctgtacgtctgtgagacggtg
gactctcaacaagtctttggtcaacatccctgccctctcactcagcctgtcctgctctct
ctcatccagcagctgtcttttgacctttgtacccgtactgaactcaaactcaactactta
gaagaagcagtaatgcatcttgatcataacgaccctgtgacaagagatcacatgggaagc
atcgtcggtcaagtgcggcaaaaactattccagttcttgcaagtggagcctcacacctcc
ttacagaagtcagcaagacgactgatgattatgcttcaggggattgtcccctccatcaat
tag
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integrated database retrieval system
