Bufo gargarizans (Asiatic toad): 122921084
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Entry
122921084 CDS
T07965
Symbol
DHX38
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122921084 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bgar03041
]
122921084 (DHX38)
Enzymes [BR:
bgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122921084 (DHX38)
Spliceosome [BR:
bgar03041
]
Complex C
Other components
Step II factors
122921084 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
Flavi_DEAD
SRP54
AAA_30
PhoH
AAA_7
AAA_16
Motif
Other DBs
NCBI-GeneID:
122921084
NCBI-ProteinID:
XP_044126922
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All DBs
Position
10:121299103..121352786
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AA seq
1218 aa
AA seq
DB search
MEDDASLHRLEGSDPSAQEGGLVVKKKNLSAEQHVFKAPAPRSSLLGLDLLAAQKRKERE
EKERQEGDKKTKVGSRDWEDKEKSSEGSGDRISRGSHGDRHYRTARVETPSYTGGVNEEF
LARNRQRERERREHGVYASSKDDRRRKERSSRDRDDRSRKSSRSERDRSERDGGSERSSR
RSEPDSPRHKPRDSSTPSRSGWEEDDSGYSGSQRSHWESPSPSPSSRDSDRGSRSDRDSS
RRDRSIRIRYTDDTPLPTPSYKFNEWASERRHLGSTPRLSQGKGKQEGDDDDDIPFTSDD
DQRQWEEDQRQADRDWYMMDEGFDESHNALSSTSEEYVRKREQQLQKQTHKRVSAQRRQI
NEDNERWETNRMLTSGVVQRLEVDEDFEEDNTAKVHLLVHNLVPPFLDGRIVFTKQPEPI
IPVRDPTSDMAIISRKGSQLVRKHREQKERKKAQHKHWELAGTKLGDIMGIKKQEEESEK
PINEDGTVDYKAEQKFADHMRERSEASSEFSRKKSLMEQRQFLPIFAVQQDLLTIIRDNS
IVIVVGETGSGKTTQLTQYLHEDGYTDYGMIACTQPRRVAAMSVAKRVSEEMQVSLGEEV
GYAIRFEDCTSEKTLIKYMTDGILLRESLREADLDHYSAVIMDEAHERSLNTDVLFGLLR
EVVTRRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVK
QALQIHLSGSAGDILIFMPGQEDIEVTSDQIIERLGELESAPQLAVLPIYSQLPSDLQAK
IFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQAN
ANQRSGRAGRTGPGQCFRLYTQSAYKSELLCTTVPEIQRTNLSNVVLLLKSLGVQDLLLF
HFMDPPPEDNMLNSMYQLWILGALDNTGSLTSTGRLMVEFPLDPALSKMLIVSCDMGCSA
EILIVVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVFLQWKNNNYSSGWCN
QHFIHAKAMRKVREVRAQLKDIMVAQRMSLSSCGSDWDVVRKCICAAYFHQAARLKGIGE
YVNVRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFY
SIKHAGKSRQENKRRAKEEVSAMEEEMILAEEQLRSRREEQDRKSTLGSSRSSKIYTPGR
KEQTEPGSPRRTPARFGL
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatgcatctcttcacagactggagggcagcgacccctctgcccaagaagga
ggtttggtggtgaagaagaagaacttaagcgctgagcagcatgtgtttaaagcaccggct
cctcgctcatcactactggggttggacctgttggcggcacaaaaaaggaaagagagagaa
gaaaaggagcgtcaggaaggggacaaaaagactaaagttggctctagagactgggaggat
aaagagaaatcttctgaggggtctggggacaggattagccggggaagtcatggggacaga
cattacagaacagctcgtgtggagaccccgtcttatactggtggagtaaatgaggagttc
ttggcaagaaaccgccagagagagcgggagagaagggagcacggggtatatgcatcttca
aaggatgaccgacgacgaaaggaacgcagcagccgagacagggatgatcgtagccgcaag
agcagcaggtctgagcgggatagatcagagcgtgatggtgggtcagagcgaagctcacgg
cgcagtgagcctgacagtccacgacacaaacccagagactcctctacaccttctcgctca
gggtgggaggaagatgacagtgggtattcaggttcccaacgctcccattgggagtctccg
tctccatctccttccagcagagattctgatcgcggctctcgcagtgaccgagacagttcg
agaagggacaggtctataagaatccggtacacagatgatacacctcttcccactccgtca
tacaaattcaatgaatgggcctctgagagacgtcatcttggatccacgccgcgtctatct
cagggaaaagggaaacaggaaggtgatgatgatgatgatattcccttcacatcagatgat
gatcagaggcaatgggaggaggatcagaggcaagcagatcgagattggtatatgatggat
gaaggatttgatgagtctcataatgccctgagctccacctctgaagaatatgtgcgcaag
agggagcagcagctgcagaaacagactcacaagagagtgtctgcacagagaaggcagata
aatgaggataatgagcgctgggaaacaaatcgcatgttgaccagtggtgtagttcagagg
ctagaagtagatgaggactttgaggaggacaatactgctaaagtgcacctactggtccat
aacttggtgcctccctttttagatggtcgaattgtgttcactaagcagcctgagcccata
atcccagtccgcgatccaacttcagacatggcgatcatctcccgcaaaggcagccagctg
gtacgcaagcaccgtgagcagaaggagaggaaaaaggctcagcacaaacactgggaattg
gctggaacaaagcttggtgatattatgggcatcaaaaagcaggaggaagagtctgagaag
ccaataaatgaggatggtactgtggattacaaggcagaacagaagtttgcagatcacatg
cgagagcgcagtgaagcgagtagtgagttttctcggaagaagagcctcatggagcagcgc
cagttcttgcccatttttgctgtccagcaggatctacttaccatcattagggataacagt
attgtcatagttgtgggagaaacaggcagcggaaagacaacacagctgactcaatatctg
cacgaagatgggtacactgattatggtatgattgcctgcacacagccacgtagagtggca
gccatgtctgtggcaaaacgagtgagcgaagagatgcaagtgagcctaggagaggaggtt
ggctacgccattcgattcgaggactgcacatcagagaaaaccctcatcaagtacatgaca
gacggtatcctgctccgagaatccctgcgtgaggccgatcttgatcactatagtgcggtc
atcatggatgaggcccatgagcgttctttgaacacagacgtgctgtttgggctgttacgt
gaggttgtcacacgtaggtctgacctgaagctgatagttacatcagctacaatggacgca
gaaaaatttgcctctttcttcggtaacgttcccattttccatattcctggacggacattc
cctgttgacattttattcagtaagaccccccaagaggactatgtggaagctgctgtgaag
caggcactgcagatccatctatccggttcagctggagatattctaatcttcatgcctggg
caagaagacattgaggtaacatcagatcagattatagagcgcctgggagagctggagagt
gccccacaattggctgtattaccaatttactcacagctaccctctgaccttcaggccaaa
atcttccagaaggcaccagacggtgtgaggaaatgcatagttgctactaacattgcggag
acatcactgactgtggatgggatcatgtttgtgatagactctgggtattgcaagttgaag
gtgtttaatccacgcattggtatggatgctttacaaatctaccccatcagccaggccaat
gccaaccagcgttctggcagagctggaagaacaggccctggccagtgcttcaggttgtat
actcaaagtgcttataagagcgagctgctgtgcactactgtcccagaaatccagcgcacc
aatctgtctaatgtggttctactactgaagtcattaggagtacaggaccttcttctattc
cactttatggacccacctccagaggacaacatgctcaactctatgtaccagctgtggatt
ttgggagctcttgataacacgggttctctcacatccactggccgtcttatggttgagttt
cctctggatccggcattatccaagatgttgattgtgtcttgtgatatgggatgcagcgct
gaaatcctcatagttgtttccatgttgtctgtaccagcaatcttctatcgaccaaaggga
cgcgaggaagagagtgatcaagtgagggaaaaatttgccgtcccagaaagtgaccactta
acgtatttaaatgtttttctccagtggaaaaacaacaactattcaagcggctggtgcaat
cagcattttatccatgccaaggcaatgagaaaggtccgtgaagtccgtgcacagttgaag
gacatcatggtggctcagcgcatgtcattatcatcctgtgggtctgactgggatgtggtt
cgtaaatgcatctgtgcagcttactttcatcaagctgccaggctaaagggaatcggtgaa
tatgtaaatgtacggacaggaatgccttgtcacttgcatccaaccagctccctttttgga
atgggttacaccccagattatattgtttatcatgaacttgtgatgacaaccaaggaatac
atgcaatgtgtcacggcagtagatggtgagtggttagcagagctaggtcctatgttctac
agcataaaacatgccggcaaatcaagacaggaaaacaagcgcagggcaaaggaggaagtg
tctgcaatggaggaggagatgatactggctgaagaacaactgcgctcaaggagagaagag
caggacaggaaaagcacattgggcagctcaaggtcttcaaagatttataccccaggaaga
aaggaacagacggaaccaggaagcccacgacgaactccagcgcgatttggcttgtga
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