Bufo gargarizans (Asiatic toad): 122921243
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Entry
122921243 CDS
T07965
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar04140
Autophagy - animal
bgar04148
Efferocytosis
bgar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122921243 (VPS39)
04148 Efferocytosis
122921243 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122921243 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bgar04131
]
122921243 (VPS39)
Membrane trafficking [BR:
bgar04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
122921243 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
WDR55
Motif
Other DBs
NCBI-GeneID:
122921243
NCBI-ProteinID:
XP_044127148
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Position
11:71212151..71463943
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AA seq
875 aa
AA seq
DB search
MHDAFEQVLILEKLPLQIDCLAAWEDCLLVGTKQGHLLLYRVKKEQGFNQFEVTLEKSNK
NFAKKIQQVHVVPQFKILVSLLDNSVCVHDLLTFQLITIISKAKGASLLSCDLQHTKTGE
EMLKMCVAVRRKLQLYYWKDRSFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLAVPLADGKVAVGQDDLTVVLNEEGTCTPKCALNWTDIPMAME
HQPPYIIAVLPRYVEVRTFEPRLLVQSIELQRPRFITSGGPNIVYVASNHFVWRLVPVSI
ATQIQQLLQDKQFELALQLAKMKDDADSEKRQQIHHIQNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVIGMYPDLLPSDYKKQLQYPNPVPLLSGAELEKANLALIDYLTQKRSHLVKKL
NDTDHHSTTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHVEE
SEHVLKKAHKYSELIILYEKKGLHEKALMVLVDQSKKANSPLKGHERTVQYLQRLGAEKM
SLIFEYCVWVLRDYPEDGLKIFTEDLPEVENLPRNLVLAFLLENFKHLAIPYLEHIILTW
EDRGPEFHNCLIKLYCEKVQTLMQAIGSTCNEEVVSVPAGSEKGELGQFRTKLLNFLEIS
NCYQPEFLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAEQYCHKHYDYAK
GGNKDVYLSLIRMYLSPPDVHCLGPIKIKLEEPKPNIAAALAVLEQHHAKLNTTKAIDLL
PANTEIREIQIFLEKVLEENAQRKRFNQVLKNLLHAEFLRVQEERISHQQVKCVITEEKI
CSVCKKKIGNSAFARYPNGVVVHYFCAKDVSSVDS
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctttgagcaggtgctgatcctggagaagctgccgctgcagatagattgc
ctggcagcctgggaggactgtcttcttgttggcactaaacagggacatttgttactgtac
agagtcaaaaaagagcaaggttttaaccaatttgaagtaacactagaaaaatccaataag
aactttgctaagaaaattcaacaggttcatgttgttcctcagttcaagatccttgtcagt
ttgcttgataacagtgtatgtgtccatgatttgctcaccttccaacttataaccatcatt
tctaaggcaaagggagcttctttactgtcttgtgatctccagcatactaaaacaggtgaa
gaaatgctaaagatgtgcgtggctgtacgtagaaaactgcaactgtattactggaaggat
cgttcatttcatgaacttcagggtgactttagtgttcctgatgtccccaaatctatggca
tggtgtgaaaactctatatgtgttggattcaaaagagactattatttgatcagggtggat
ggaaaaggttccattaaggaactctttcctacaggcaaacagttagaaccacttgcagta
ccactggctgatggaaaagtggctgttggacaggatgacctgactgtggttttgaatgaa
gaggggacctgcacacccaagtgtgccctaaactggactgatattcccatggcaatggaa
catcagcctccttatatcattgctgtgcttccaaggtacgtggaagtacgaacatttgaa
ccccgcctcttagtacaaagcattgagctgcagcggcctcgttttattacatctggaggt
ccaaacattgtatatgtggcaagtaatcactttgtttggcggttggttcctgtgtccatt
gcaacacaaatacaacaactacttcaggacaagcagtttgaacttgctttacaattggcg
aagatgaaagatgatgctgacagtgaaaagaggcagcagatccatcacattcagaacttg
tatgctttcaaccttttttgccagaaacgttttgacgagtctatgcaagtgtttgccaag
cttggtactgatccaacccatgttattggaatgtacccagatttattgccctctgactac
aagaagcagctgcagtaccctaatccagtgccattgctctcaggtgctgaactggaaaag
gccaacctagcccttatagattatttgacccagaaaagaagtcatctggttaagaagcta
aatgacactgatcatcattctacaacctccccccttatggaaggaactccaacgatcaaa
tcgaaaaagaagcttcttcaaatcatagacaccactctgctaaagtgttacctgcatacc
aatgttgctctggtggcacctctcctgcgactggagaacaatcattgccatgtggaagag
agtgaacatgtgctgaaaaaggcacacaaatacagtgaactcatcatcctctatgagaag
aaaggccttcacgaaaaagctcttatggtcctggttgaccagtcgaaaaaagccaattcg
ccattgaaaggtcatgaaagaaccgtacagtacttacaaagattaggagcagaaaaaatg
tctttgatctttgagtattgcgtatgggtcctgagagattatcctgaagatggattaaag
atattcactgaagatctcccagaagttgaaaaccttccccgaaatcttgtactagcattt
ttattggaaaacttcaaacaccttgctattccttatttggaacacattatacttacctgg
gaggatcggggccctgaatttcacaactgccttatcaagttgtattgcgagaaggtgcag
actctcatgcaagctataggttccacatgcaatgaagaggttgtaagtgttcctgcaggc
tcagaaaagggggagctgggacaatttcgcacaaaattgctaaatttcctggaaatttca
aactgttatcagccagagtttctgatcagtgattttccatttgatgggctgctggaggaa
agagcattactcttgggtcgaatgggcaagcacgaacaggctctgtttatttatgtgcat
atcctgaaagatactaacatggcagaacagtactgccacaaacattatgattatgccaaa
ggtggcaacaaagatgtctatttgtctttgatcagaatgtacctttctccacctgatgtg
cattgtctgggtccaattaaaattaaactggaagagccaaagccaaacattgctgctgcc
ttagcagtgttggagcagcatcatgcaaaactgaatacaacaaaggccatagacttatta
ccagcaaacacagagattcgagagatccagatctttctggagaaagtattggaggagaat
gctcaaaggaagagattcaatcaagttctgaagaatctgctgcatgctgagtttttgaga
gtacaggaggagaggatttcccatcagcaagtcaaatgtgttataacggaagaaaagatt
tgtagtgtttgcaagaaaaagattggaaacagtgcatttgctcgctatccaaatggtgtg
gttgttcattacttctgtgccaaggatgtcagctctgtggactcttga
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