Bufo gargarizans (Asiatic toad): 122924635
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Entry
122924635 CDS
T07965
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
bgar
Bufo gargarizans (Asiatic toad)
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bgar03041
]
122924635 (YTHDC2)
Enzymes [BR:
bgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122924635 (YTHDC2)
Spliceosome [BR:
bgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122924635 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
HA2_N
Ank
AAA_19
nSTAND3
ATPase
AAA_22
Ank_4
AAA_7
SRP54
PhoH
AAA_16
AAA_29
AAA_23
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
122924635
NCBI-ProteinID:
XP_044131856
LinkDB
All DBs
Position
1:complement(618455716..618586213)
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AA seq
1420 aa
AA seq
DB search
MSHPSSMSPSPSTTMKPGTPKSRKAKGLKDIRIDEEVKIAVNIALDRFRYSDQKEMEFPS
SLTSTERAFIHRLAQSLGLISKSKGKGISRYLTIRKKDGSEACSARMSCCLIQNTRHAMR
SLIQRFPLTNKERTELLPKTERGNVSAMEAESREMSKTSGRLNNGISQVPVKRGESEFDS
FRQSLPVFEKREEIVQVIKDNKVVLIVGETGSGKTTQIPQFLLDDCYKNGMACRIFCTQP
RRLAAIAVAERVASERGEKIGQTVGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDAALS
TVTHVIVDEVHERDRFSDFLVTKLRDLIQKLPTLKLILSSAALDVTLFLKYFGGCPILYI
QGRPFEVKEMFLEDILRTTGYTNKDMLKYKKEKQCEDKQKTTLSEWHSAKENSLKSNTQR
QRSVTNITEDYDLLDDGGDTVFSQLTEKDVNCLEPWLMKEMDSCLSDIWLHRDIDAFAQL
FQLILTENVSVDYRHSETSASPLMVAAGRGFLSQVEQLIGMGANIHGKASNGWTALDWAR
HFGQTEVVDLLESYSASLDPGSLDESSLVQAESSSLSVEEQELLKAYHYSFDDEKVDLDL
IMHILNNICQNSDTGAILIFLPGYDEIVGLRDRILHDDKRFAENSQRYQIFMLHSNMQTA
DQRKVLKTPPAGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSYDALNHVTMLKMVWI
SKASAIQRKGRAGRCRPGVCFRLFSRLRFQNMLEFQTPELLRMPLHELCLHTKLLAPINS
PIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCA
VVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTYSDHMALLRAFQAWQ
KARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGAGDIRDVNANSENW
AVVKAALVAGMYPNLIHVDRENMQLTSHKEKRVRLHPTSVLSQPQYKKIPPENGQAASIQ
VLPTDWLMYDEMTRAHRIANIRCCTLVTPVTIAVFSGPARLPSNALQEPSSCRATLDGNE
SSDSEMEDRTTSMLATLKLDEWLHFKLDLESANLLLQLRQKWYSLFLRRMKAPSKPWSQV
DEATIRAVITVLTAEEQSAGLQQPSGIGQRPRPMSSEELPISSSWKTNQSRKSSAETDFS
DDLSNLDRTIKSPSFTFSQQLKHKERVLQHPKRLEEKTEQLSARYPESSSYSSPCGSPSP
PASIKTPKSSSPRPNLPMRYFIMKSSNLRNLDISQQKGIWSTTPSNERKLNRAFWESSCV
YLVFSVQGSGHFQGFARMCSEIGLEKSQDWGSTSLGGVFKVEWIRKESLPFQQAHHLLNP
WNDNKKVQISRDGQELEPQVGEQLLLLWDKVLLGDRSVSH
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatccaagcagtatgtcgccaagtcctagcacgactatgaaaccaggcactccc
aaatctagaaaagcgaaggggctgaaggacattcgtatagatgaggaggtgaagattgcc
gttaatattgcactggacagatttcggtatagtgaccaaaaagagatggaatttccttca
tctctgaccagcactgagagagcctttatccatcgtcttgcccagtcacttggactaata
tcgaagagcaaaggaaaaggcattagtagatatttaacaataaggaagaaggatggctct
gaggcctgcagcgctcgtatgtcctgctgcctgatacagaacacgaggcatgccatgagg
agcctcattcagcgcttccctttgaccaataaggaaagaactgaactgcttccaaaaaca
gagcggggaaacgtgtctgcaatggaagctgagagccgtgagatgagcaaaaccagtgga
cgactaaacaatggcatctcccaagttccagtgaagagaggggaatcggagtttgactct
tttcgtcagtcgttacctgtatttgaaaagcgagaggaaattgttcaggttattaaagat
aataaagttgttctgattgttggagaaacgggctcaggaaaaaccacccagattccccag
tttcttcttgatgactgctacaaaaatggaatggcttgtcgaatcttctgcactcagccg
aggcgattggctgcaattgctgttgctgaaagggttgcttctgaaaggggagagaaaatt
ggtcaaacggtcggttaccagattcgcctagagagccgggtttctccaaagacactcctt
accttttgcactaatggagtcctcttgcggactctaatggctggagatgctgcactttca
actgtaactcacgtcattgtggacgaagttcatgaacgggatcggttcagtgacttccta
gtaactaaactccgagatttgatacagaaacttccaactttgaagctgattctctccagt
gccgcacttgacgtaaccttgtttctgaagtactttggagggtgtcccatcttgtacata
caaggacgaccttttgaagtaaaagaaatgtttttagaagatattttaagaaccacgggc
tacacaaataaggatatgctgaaatacaagaaagagaagcagtgtgaggacaagcaaaag
acaaccctgtctgaatggcattcagcaaaagagaacagcctaaagagtaacacccaaaga
caaagaagcgtcaccaacatcactgaggactatgatttgctggatgatggaggggacact
gttttcagtcaattgactgagaaagatgtgaattgtctggagccatggctgatgaaggaa
atggactcttgtctttctgatatttggcttcaccgagatatagatgcgtttgctcaactt
tttcaattgatactgaccgagaatgttagtgttgactacagacacagtgaaactagtgca
tctccattaatggtggctgctggacgaggctttttaagccaggtggagcaacttattggc
atgggagccaacatccacggcaaagcttcaaatggatggacagctctggactgggcaaga
catttcggacagactgaagttgttgacctcttggaatcatacagtgcttccttggatcct
ggcagtctagatgaaagctccctggtgcaggctgaaagcagcagcttgagcgtggaggaa
caagagcttcttaaagcctaccactacagttttgatgatgaaaaagtggaccttgacctg
ataatgcatattcttaataatatctgccaaaattcagacacaggggccatactaatattt
ctcccaggatatgatgaaatagtagggttaagagatcgcatcttgcatgatgacaagaga
tttgctgaaaattctcaaagatatcaaatcttcatgctgcactcaaacatgcaaactgct
gaccagaggaaggtcttaaagactccaccagctggtattcgcaaaattatactttcaaca
aatatagcagagaccagtatcacagtaaatgatgtggtgtttgtgatagactctggcaaa
gtgaaagagaaatcttatgatgctctgaaccatgtgacgatgcttaaaatggtttggatt
tctaaagccagtgccattcagaggaaaggaagggctggtcgctgccgtcctggtgtatgt
ttccgcctgttcagcagacttcgttttcagaatatgttggagttccagactcctgaacta
ctgcgaatgcctctgcatgagctttgcttgcatacaaaattgttggcgccaataaactct
ccgattgctgatttcttaatgaaagctccagagccaccaccagctttaattgttcgcaac
gccgtacagatgctgaagactattgacgccatggacacttgggaagatctgactgaactt
ggttatcacttagctgatttaccagtggaaccacaccttggcaaaatggtgctgtgtgca
gttgttctgaagtgcttggaccctatacttactatagcttgcactttagcatatcgtgat
ccatttgtcttgccaactcaggcttcccaaaaacgtgcagccatgctgtgcaggaagcgg
tttacagcagggacatacagcgatcatatggctctgctcagggcttttcaggcttggcag
aaggctcgaagtgatggatgggaaagagccttctgtgagaagaattttctgtctcaggct
acaatggaaattattattggcatgagaactcagcttcttgggcagctcagggcttcaggg
ttcgttagggctcgtggagctggggacataagagatgtgaatgcaaactccgagaactgg
gctgtagtaaaagctgcccttgttgcgggcatgtatccaaacctcatccatgtagacaga
gaaaatatgcagctcaccagccataaggaaaagcgagtgcgcttgcaccctacttcagtt
ttaagccaaccacagtataaaaagatcccacctgagaatgggcaggctgcctctatccaa
gttttgcctacagactggctgatgtacgatgagatgacccgagctcacagaattgctaat
attagatgctgcacactggttacacctgtcactattgcagtcttctcaggacctgccagg
cttcccagtaatgctttgcaagagccatcttcgtgtcgagccacattggatggtaatgag
agcagtgacagtgagatggaagacagaaccacgtctatgttggcaacattaaagttggat
gagtggttacattttaagcttgatctggagtctgctaatttgttgctacaactgaggcaa
aaatggtacagtttatttctaagacggatgaaggcaccctcaaaaccttggtctcaggtg
gatgaggccaccatccgggcggtcataactgtgttaactgctgaagagcagtcagcaggt
ttacagcagccttctggaattgggcagagaccaagaccaatgtcttctgaagaacttcca
atatcttcttcttggaagaccaatcaaagtcgtaagagttcagcagaaacagatttctct
gatgacttaagcaatttagacagaactataaaatctccatccttcacattttctcaacaa
ctgaaacataaagagagggttttacaacatccaaaacgacttgaggagaaaacagaacag
ttgtctgcaagatatcctgaaagcagtagctactctagcccatgtggaagcccatctcct
cctgcctctatcaagacccctaaatcttcatcaccccgaccaaatctgcctatgaggtat
tttataatgaagagcagcaacctaagaaaccttgacatttcccagcaaaaaggaatatgg
tccaccaccccaagtaacgagcgcaaactgaacagggcattctgggagagcagctgcgtt
tatctggtgttttctgttcaaggatctggtcattttcagggcttcgcgagaatgtgttca
gagattgggctggagaagagtcaggattggggatccactagtcttgggggagtgtttaag
gtggaatggattcggaaggaaagcctgccttttcagcaagcacaccatttactgaaccca
tggaatgacaacaagaaagttcaaataagtcgtgatggacaggaactggagcctcaggtt
ggggaacagctgttgctgctatgggacaaagttcttctgggagatagaagtgtgtcccac
tga
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integrated database retrieval system
