Bufo gargarizans (Asiatic toad): 122927327
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Entry
122927327 CDS
T07965
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122927327 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122927327 (XAB2)
03041 Spliceosome [BR:
bgar03041
]
122927327 (XAB2)
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122927327 (XAB2)
Spliceosome [BR:
bgar03041
]
Complex B
Other components
Prp19-related factors
122927327 (XAB2)
Complex C
122927327 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_2
TPR_15
TPR_8
TPR_19
ARM_TT21
ARM_TT21_C
TPR_16
Tcf25
CCDC84
SF3A3
TPR_1
Motif
Other DBs
NCBI-GeneID:
122927327
NCBI-ProteinID:
XP_044134991
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All DBs
Position
2:63865914..63900475
Genome browser
AA seq
837 aa
AA seq
DB search
MPEKEISFEEDDLQFEEEILRNPYSVKCWMRYIESKGSAPAHTLNLIYERALKELPGSYK
LWYAYLKQRRKQVKRRCITDLVFEEVNNCHERALVFMHKMPRIWLDYCQFLVDQCKITRT
RRTFDRALRALPITQHYRVWPLYLRFVRVHPLPETAVRVYRRYLKLCPENAEEYIQYLRS
IDRLDEAASRLAGIVNQDDFVSKEGKSNYQLWQELCTLLCQNPGSVRSLDSAAIIRGGLT
RFTDQRGKLWCALAEYHTRSGHFEKARDVYEEAIQTVTTVRDFTQVFDSYAQFEESIIAA
KMETVSEMGKEEEDDLDLELRLARFEQLMERRPVLLNGVLLRQNPHNVHEWHKRVQLYQG
KPREIINTFTEAVQTVNPAKATGKPHTLWVAFAKFYEDNGQIDDARAILQRATQVQYTHV
DDLSAVWCQFGEMELRHENYEEALSILRKATAVPARKAEYFDASEPVQNRLYKSLKVWSM
LADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAFFLEEHNYFEESFKAYERGIALFR
WPNVYDIWSTYLSKFIARYGGKKLERARDLFEQALDGCPRKFAKNIFLLYAKLEEEHGLA
RHAMALYERATQAVEPGEQYEMFNIYIKRAAEIYGVTHTRSIYERAIEILHDDHAREMCL
RFADMECKLGEIDRGRAVYSYCSQMCDPRLTSGFWQTWRDFEVRHGNEDTLREMLRVKRS
VQAKYNTQGTFLVSQRLRAEGVGANEESKEVDEMQALEKRAAVVAAEAEKDKPQMKEKIL
FVRSDASRTELAELTLQNNPDEINIGDEDSEEDMEPDEVQLEQKSIPSSVFSGLADD
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaaaagaaatctcgtttgaagaagatgacttgcagtttgaggaggagatcctg
cggaatccgtattctgtcaagtgctggatgagatatattgaatccaagggctccgcaccg
gctcatacccttaacctaatctatgagagggcacttaaggagcttccaggaagctacaag
ctgtggtacgcctatctaaagcagcgcaggaagcaggtgaagaggcgatgcatcactgat
ctggtcttcgaggaggtgaataattgccatgagagagccctggtcttcatgcacaagatg
ccccggatttggctggattactgccagttcctcgtggaccagtgtaaaattacccgcact
aggagaacgtttgaccgggctcttcgtgctcttcccattacccagcactatcgagtctgg
cccctttacttacgctttgtccgagtgcaccccctaccagagactgcagtcagggtctac
aggaggtacttgaagctgtgtcctgagaatgcggaggagtacatacaatatctacgctct
attgacagactggatgaagcggcctccagactggcaggcattgtaaaccaagatgacttt
gtatcaaaggaaggaaaatctaattaccagttatggcaggagctgtgtaccctactgtgc
cagaacccaggatctgtccgctcccttgactcagcagccatcattcgaggtggcttgacg
cgctttacagatcagaggggaaagctgtggtgcgcccttgcagaatatcacacacgcagt
ggccattttgaaaaggctcgagatgtgtatgaggaggccattcagaccgtcaccactgta
cgtgacttcacccaagtcttcgacagctacgctcagtttgaagagagcatcattgctgct
aaaatggagaccgtcagtgagatgggaaaagaagaggaggatgacctggacctggagctg
agattggctcgctttgagcagctgatggagcggagacctgttttactgaatggggtgtta
ctccgacagaacccacacaatgttcacgagtggcacaagagggtacagctctatcaaggc
aagccacgagagattattaacacattcacagaggctgtccagactgtgaatccagccaag
gcaactgggaaaccgcacacgttatgggtggcattcgccaagttctatgaggacaatggc
caaatcgacgacgctcgagcgatcctgcagagagcgacccaggtgcagtacacacatgtg
gatgacttgtccgctgtttggtgtcagttcggtgagatggagctgagacatgagaattat
gaggaggcgctgtctatattaaggaaagccacggcagtaccggcccgcaaggctgaatat
tttgatgcctctgagccggtgcagaacagactctacaaatccctgaaagtctggtccatg
ttggccgacctggaggaaagtctggggactttcaagtccacaaaggcggtatacgatcgc
attatcgacctccgcatagccacgccacagatcatcatcaactacgctttcttcttggag
gaacacaactattttgaagaaagttttaaggcctatgaacgtggtatcgcccttttccgc
tggcctaatgtctatgacatctggagcacttacctgtctaagttcattgctcggtatgga
gggaagaagctggagagagctcgggacctctttgaacaagccttggatggttgtcctcga
aagtttgcaaaaaatatattcctgctgtatgcaaaactggaagaagagcacggtctggcc
cgccacgccatggctctgtatgagcgagcgactcaggcagtggaaccaggagagcagtac
gagatgtttaacatttacattaagagagcggctgaaatctatggcgttacacacacccgc
agcatttatgagcgggccattgagattttgcatgatgaccatgcccgggagatgtgtcta
cgatttgctgacatggagtgtaaattaggagaaattgaccgtggccgagctgtgtattcc
tactgctctcaaatgtgcgatccccggttgacctcagggttttggcagacctggagagat
tttgaggtgcggcatggtaatgaggacacactgcgtgagatgctgcgggtcaagcgtagc
gtacaagccaagtacaacacacaggggacgttccttgtatctcaaaggttgagggccgaa
ggagtaggcgctaacgaggaaagcaaagaagtcgacgagatgcaagctctggagaagaga
gcagccgtggtggcagctgaggcagagaaggacaaacctcagatgaaggagaagatcctc
tttgtcaggtctgacgcctcccgcacagagttagcagagctgacgcttcagaataatcca
gacgagatcaacataggagatgaggattcggaagaggatatggagcctgatgaggtgcag
ctggagcagaaatcgatcccttcctcggtcttctctggtctcgccgatgactga
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