Bufo gargarizans (Asiatic toad): 122927942
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Entry
122927942 CDS
T07965
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03018
RNA degradation
bgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122927942 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
122927942 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122927942 (LSM8)
03041 Spliceosome [BR:
bgar03041
]
122927942 (LSM8)
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122927942 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
122927942 (LSM8)
Spliceosome [BR:
bgar03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122927942 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
122927942
NCBI-ProteinID:
XP_044136226
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All DBs
Position
2:complement(272430251..272436472)
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AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEDTDSALDLGNIRAEPLNSVVN
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcagcgctagagaattatatcaaccgaacggttgcggttataacggccgacgga
aggatgattgtgggaacgcttaagggttttgatcagactattaacctcattttggatgag
agtcatgagcgagtattcagttcatcacaaggagtagaacaagtggtgctgggactgtac
attgtacgaggagacaatgtggctgtgattggagagatcgatgaagacacagactctgca
ctggacctggggaatattagagctgaacctctgaattctgttgtaaattga
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