Bufo gargarizans (Asiatic toad): 122932116
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Entry
122932116 CDS
T07965
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03015
mRNA surveillance pathway
bgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122932116 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
122932116 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122932116 (PABPC4)
03041 Spliceosome [BR:
bgar03041
]
122932116 (PABPC4)
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122932116 (PABPC4)
mRNA cycle factors
Stress granule specific factors
122932116 (PABPC4)
Spliceosome [BR:
bgar03041
]
Complex C
Other components
Complex C specific factors
122932116 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RBD_RDR6
RRM_10
Motif
Other DBs
NCBI-GeneID:
122932116
NCBI-ProteinID:
XP_044142292
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All DBs
Position
3:complement(291603784..291672869)
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AA seq
626 aa
AA seq
DB search
MHTATCSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRRERE
AELGAKAKEFTNVYIKNFGEDMDDERLKETFGKYGKTLSVKVMTDPSGKSKGFGFVSFEK
HEDANKAVDDMNGRDINGKVMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTLINQFQPAPGGYFVPAVPQAQNRP
TYYAPNHMTQVRPGPRWQQAGRPQGFQPIPNSLRQSGPRQSLRHLPPSSTQGTRGIPNVA
QRVGVSSATQTLGPRHQVSSTPPRAVPPYKYTRCPLPGVQPLQNPQPAVHVQGQEPLTAS
MLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVE
EAVAVLQAHQAKKDAAQKVVIVAATS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcacacagctacctgcagctatcctatggcctccctctatgtgggtgacctccatcca
gatgtcacagaagccatgctctacgagaagttcagtccagctgggcctgtgctgtctata
cgggtctgcagggacatgatcaccagaagatcccttggttatgcttatgtcaacttccag
caacctgcagacgctgagcgggctctggacaccatgaacttcgatgtgatcaaaggaaaa
cctattcggattatgtggtcccagcgtgacccatctcttaggaagtcaggagtgggcaat
gtcttcataaagaatctcgacaaatcaattgacaacaaagcactttatgacaccttttct
gcatttggcaacattctttcctgtaaggtggtgtgtgatgagaatggctccaagggatat
gcttttgtgcactttgaaacacaagatgctgcggatagagccatagagaagatgaacggc
atgctgctcaacgaccgcaaagtgtttgttggtcgttttaaatgcagaagggagagggaa
gcagaacttggagctaaagccaaagaattcaccaacgtttacatcaagaactttggggaa
gatatggatgatgaacgactgaaggagaccttcggcaaatacgggaagactctgagcgtt
aaggtgatgactgacccgagtggcaagtccaaagggtttggctttgtcagctttgaaaaa
catgaagatgccaataaggctgtagatgacatgaacggaagggacatcaatggaaaagtg
atgtttgttggcagagcacaaaaaaaggttgagcgccaagcagagctgaaaaggcggttt
gaacagttaaagcaagagcggattagtcgctatcagggtgtgaatttgtatattaaaaat
ctggatgacactattgatgatgaaaagctaaggaaagagttttctccatttggatccatc
acaagtgccaaggttatgctggaggatggccgtagcaaaggatttggatttgtttgcttt
tcttccccagaagaagccactaaagcagtcactgagatgaatgggagaattgtagggtct
aaaccactctatgtggcattggctcaaagaaaggaggaacggaaagcgcatcttaccaat
cagtatatgcagcgtatagcaggaatgagggctcttcctgccaacacccttatcaaccaa
tttcagccagctcctggaggatactttgtgcctgctgttccgcaggctcaaaacagacct
acatactatgcacccaatcatatgacccaagtacggccaggccctcgatggcaacaagca
ggacgtcctcagggcttccaacccatacctaattcactgcgccagagtggcccacgtcag
tcactgcgccatctaccaccttcaagtactcagggcacccgtggaatccccaacgtagcc
cagagagttggggtatcttccgctactcagaccttaggtccacgacaccaagtctcttct
actccccctcgagctgtgcctccgtacaagtacacacgttgcccactccctggtgttcag
cctctacagaacccccagcctgctgtccatgtacagggacaggagccactcacagcttca
atgctggccgctgcccctccccaagaacagaaacaaatgttgggagaacgtctctttcct
cttatccaagccatgcacccctcactagcgggtaaaataacaggaatgctgctagaaatt
gataactcagagcttctacacatgttggaatccccagagtctctgcgctccaaggttgaa
gaggctgttgcagttttacaagctcaccaagctaagaaagacgctgctcagaaggtggtg
atcgttgctgctacctcttga
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