Bufo gargarizans (Asiatic toad): 122933306
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Entry
122933306 CDS
T07965
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122933306 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bgar03041
]
122933306 (PRPF40B)
Spliceosome [BR:
bgar03041
]
Complex A
U1 snRNP components
U1 related factors
122933306 (PRPF40B)
Complex B
122933306 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
WW_2
LUD_dom
DTW
Motif
Other DBs
NCBI-GeneID:
122933306
NCBI-ProteinID:
XP_044144157
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All DBs
Position
3:complement(164347980..164436547)
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AA seq
913 aa
AA seq
DB search
MSAPDSGTAPPGQTAPFPNAPPLMPPPFMPPPGLPPPFPPIGLPPIGQRPPAMPPIPHAM
LPPMIPPMAVPPPLSQLPSLVPPMMPTLMLPAITTSTTTQAIAPGTEAVSSPVTQPAPTT
QKAAEDSSSSQDIPVKKSLWTEHKAPDGRTYYYNTETKQSTWEKPDDLKSKPELLLSQCC
WKEYKSDTGKPYYYNSQTKESRWTKPKDLEELEVLIKQEEDSRIDHESKSAASSPRSTAA
LSDTEMAPTEEVFMLPPSLPETANTIETETSQEDATVNQKELINSDSLLIEDSKVEPEKQ
FYHWSTKEEAKQLFKELLKDKGVPSNASWEQAMKMIINDPRYSALPKLSEKKQTFNAYKS
QREKEEKEETRLRAKEAKEKLQSFLEQHEKMTSTTRYRKAEQMFGEQEVWSVVPERDRKE
IYDDVLFFLAKKEKEQAKQLRKRNVQALKNILDNMSNVSFQTTWSEAQQYLMDNPMFAED
EELQNMDKEDALICFEEHIRALEKDETEEKEKSRLRERRQQRKNRESFQVFLDELHETGQ
LHSMSTWMELYPSVSTDTRFSNMLGQTGSTPLDLFKFYVEDLKARFHDEKKIIKDILKDR
NFSVEVNTTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARERERGKEEARKFRRK
EAAFKSMLKQAAPPLEIDSNWEDVRERFVGDSAFDQITVESERIRLFKEFMLSIECPFLQ
NECQHHHFKSKKHSKKSKKHHRKHSQSPIPAEWGRKKVPDISTWDPTGAVEKTSETEEEN
HQHRSQKRKKRNHSESGSDVSSSGDSEHSSRKSKRQKKKSKKKRHKSNSPESETEKEKER
SKRERDQDSEQTKERMKDRAHDQETESADGRLRLLKQASQKEKTGWDTSDSELSEGELEK
RRRCLLQQLDDDQ
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaccagactctggaacagctccacctggtcagacagcccctttccccaatgct
cctcctctgatgcctccaccttttatgccaccccctggccttccacctccatttccacca
attggacttccaccaataggacagagaccaccagcaatgcccccaattccacatgcaatg
ttgccacctatgatcccacccatggcagtaccgcctcccctctctcagctcccaagtctt
gtgccaccaatgatgccgactttgatgctgccagccataacgaccagcactactacacag
gcgattgctcctggaacagaagctgtgagctcacctgtgactcaaccagctccaaccaca
cagaaagctgcggaagacagctcatcctctcaagacattccagtaaagaagtctctatgg
actgagcacaaagctccagatgggcgtacctactactacaacactgaaaccaagcagtcc
acctgggagaagccagatgatctaaaatccaaaccagagcttcttctctcacaatgttgc
tggaaggaatataaatctgacacaggaaagccatattactacaactctcagacgaaggag
tcgcgctggaccaagcccaaagacctggaggaattggaggtgttgataaagcaagaggaa
gacagtagaattgatcatgaaagtaagtctgcagcctccagtcctcgctctactgcagct
ttgtctgacactgaaatggcacctactgaagaggtatttatgctgccgcccagtttacca
gagacagctaacaccattgaaacagaaacgtcacaagaggatgccacagttaaccagaag
gagctgattaatagcgatagcctgctaatagaagatagcaaagtggaaccggagaaacaa
ttttatcactggagcacaaaagaagaagctaagcaattatttaaagaacttctgaaggat
aagggtgttccttctaatgcatcttgggagcaagcaatgaaaatgattataaatgatcca
cgatatagtgcactgccaaaactgagtgaaaagaagcagacattcaatgcttacaagtct
cagcgtgaaaaagaagagaaggaggaaactagactcagggctaaggaggctaaagagaag
ctgcagagtttcttagagcagcacgaaaagatgacgtcaaccacacgatacaggaaagct
gagcaaatgtttggagaacaagaagtgtggtcagttgttccagaaagagatcgcaaagaa
atttacgatgatgtactcttctttttggcaaaaaaagaaaaggaacaagcaaagcagctg
aggaaacgcaatgttcaagcactgaaaaatatcttggataatatgagcaatgttagtttc
caaacaacatggtcagaagctcagcagtacctaatggataatccaatgtttgctgaggat
gaagaactgcagaatatggataaagaagatgcacttatttgctttgaggagcatatccga
gctctggaaaaagacgaaactgaagaaaaggaaaaaagtcggcttcgtgaaaggcgccag
cagcgtaaaaatcgtgaatcttttcaggtgtttcttgatgagctgcatgaaacaggacag
ctacactctatgtctacttggatggagctgtacccgtcagtaagcactgacactcgcttt
tctaacatgctaggacagacaggctctaccccacttgatctgtttaagttttatgtggag
gatctgaaggctcgattccatgatgagaaaaagatcataaaagatattctaaaggatcgg
aacttcagtgttgaggtgaatactacatttgaagacttcgcacacattatcagttttgac
aagcgagcggcgacacttgatgcaggaaacatcaagttaacatttaatagtctgctggag
aaagcagaggctcgggaacgtgagcgcggaaaggaggaagctcgaaagtttagaagaaag
gaagctgcatttaaaagcatgttgaagcaagcggctccacctctggaaatagacagcaac
tgggaggatgtgcgagagcgttttgttggcgacagtgcttttgaccagattacagtggaa
tcggaaaggatccgtctgttcaaagaatttatgctgtctattgagtgtccttttttgcag
aatgaatgtcagcatcatcattttaagagcaagaaacactccaaaaaatccaaaaagcac
caccgcaagcattctcagtcacccatcccagcagagtgggggaggaagaaggttccagac
atctctacatgggatcccactggagcagtggagaaaacatcagagacagaagaggaaaat
caccaacatcgctcacaaaaaagaaaaaaaagaaaccattcagagtcagggtctgacgtc
tcctcatcaggcgattcagaacatagctccaggaaatccaagagacagaaaaaaaagagt
aagaaaaagagacacaaatcgaacagtcctgagagtgaaacagagaaggaaaaagagagg
agtaagagagagcgagatcaagatagtgaacagacgaaagagagaatgaaagaccgagcc
catgaccaagagacagagtctgcagacggtcgcctcagattactaaaacaggcctcacag
aaggagaaaacaggctgggacacatcagacagcgagctcagtgaaggagaactggagaag
aggcgacgatgtttactgcagcagctggatgatgatcaatag
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