Bufo gargarizans (Asiatic toad): 122935352
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Entry
122935352 CDS
T07965
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar04510
Focal adhesion
bgar04512
ECM-receptor interaction
bgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122935352
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122935352
09142 Cell motility
04820 Cytoskeleton in muscle cells
122935352
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bgar00535
]
122935352
Proteoglycans [BR:
bgar00535
]
Extracellular matrix (ECM) proteoglycans
Others
122935352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122935352
NCBI-ProteinID:
XP_044147052
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All DBs
Position
4:complement(241474264..241589935)
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AA seq
719 aa
AA seq
DB search
MSVRRFYTGVTELGNYVTYLTDDIIEFDLQWMLIHCDPLRPERESCTELEAKRAVTQVMI
QRGPPGPPGPEGPPGPPGVPGIDGIDGDRGPDGPPGPPGADGDSGKPGSPGLPGEPGADG
LTGPEGNAGPPGSRGQKGEPGLPGSRGLSGGGVSGPRGSPGPSGLPGELGRSGPVGDAGG
RGLPGPPGPPGPPGTVALPEGDPLCPNSCPPGRPGYPGLAGMKGHKGVKGEAGEPGKQGH
KGEEGEQGEIGEIGSQGPPGPQGLRGITGIIGLKGSKGARAVDGEPGPRGVAGAAGDQGQ
RGSLGEAGPKGDRGTVGPRGITGMPGSKGESGLPGVDGRDGIPGMPGSKGDSAEPGAPGE
AGLQGLPGLPGNQGAKGVAGEKGNSGAPGVAGLMGKSGKPGDQGPQGEVGPRGPVGPSGD
RGEAGPVGPPGAPGKQGPRGDPGFLGLPGPPGLPGLKGDRGGVGETGPKGEQGGAGEEGF
GGEKGEQGEIGNPGPKGTTGSPGEPGNRGPEGGRGLPGVEGPQGSSGPRGMQGEHGAPGL
PGSQGPAGREPTDQHIKQVCMRVLQEQLANLAASLRRPESGAAGLPGRPGAPGPPGSPGD
NGVPGHVGARGLPGLKGPPGEIGLKGPKGDAGERGERGLPGRGPKGLPGMQGLTGEPGKP
SYGRDGRDGERGPPGPAGQPGIPGPPGPAGHAGYCDPSSCSLQAIAAPQSAKDSNMKGP
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttagaagattttacactggggtcactgagttaggaaattatgtcacctattta
acagatgacatcattgaatttgacctccagtggatgttaattcattgtgatcctctgaga
cctgagagagagtcctgcacagagctagaggccaagagagcggtcacccaggtcatgatc
cagagagggcccccgggaccccctggaccagaaggtcctcccggaccacccggtgttcct
ggcatagatggcattgatggagacaggggtccagatggtcctccaggccctccaggtgca
gatggggattcaggcaaaccaggatctcccgggttaccaggcgagccaggagccgatggg
ctgactggacctgaaggaaatgctgggcctcctggatcaagaggtcaaaagggtgagcct
ggattgccaggttcgcgcggtttgtcgggcggaggagtttcagggccacggggatcacct
ggtccctctgggcttccaggagaattgggtcggtcgggtccagtgggtgatgctggtgga
cgaggacttccaggaccaccagggccaccgggaccaccagggacagttgctctgcccgaa
ggagatcccctgtgccctaattcatgcccaccaggccgtccaggatatccaggtttggct
ggaatgaagggccacaaaggtgtcaagggagaagctggcgaaccaggaaaacaaggtcat
aagggagaagaaggtgaacaaggagaaattggtgaaattggttcccaaggacctccagga
ccacaaggcttaagaggaattactggcataatcggactaaaaggaagcaagggtgctcgt
gcagttgacggagagcctggtcctcgaggggttgctggagctgctggtgaccaaggtcag
agaggctcactaggagaagctggaccaaaaggcgataggggaactgttggacccagagga
atcactggaatgccaggctcaaagggagaatcgggattgccaggcgttgatggccgtgat
ggaatccctggaatgccaggatcaaagggtgactctgcagaacctggagccccaggagaa
gcaggtcttcaaggattgccaggtttgccaggcaatcagggagcaaaaggagtagctgga
gagaagggaaacagtggtgccccaggtgtagctggattaatgggaaaatctggtaaacct
ggtgatcaaggacctcaaggggaagttggcccaagaggacctgttggaccttcaggtgac
agaggagaagcaggtcccgtaggcccacccggagcacctggaaaacaaggtccacgaggt
gatcctggctttttaggtctgcctggtccccctggtcttccaggacttaaaggtgacagg
ggtggtgtcggggagactggacctaaaggagagcagggtggtgccggagaagagggattt
ggcggagaaaaaggtgaacagggtgaaattggaaatccaggccccaagggaacgactgga
agccccggagagcccggtaatcgtggcccagaaggaggtcgtggtctgccaggtgtagaa
ggtcctcaaggttcttctggtcctcgtggtatgcaaggtgaacatggtgcacctggttta
ccaggaagtcagggcccagcaggtagagaaccaacagatcagcacattaagcaagtctgc
atgagagttttgcaagaacagttagcaaacttggcggctagtctacgaaggccagaatct
ggagcagctggtttaccaggacgaccgggtgcaccaggaccacctggatcaccaggagat
aatggtgttcctggacatgttggagcaagaggacttcctgggttgaaagggcctcctgga
gaaattggtcttaaaggtccaaaaggtgatgctggtgaaagaggagagagaggactacca
ggcagaggtccaaaaggattgccaggaatgcaaggacttacaggtgaaccaggaaagcca
agttatggacgagatggtcgtgatggagagagagggccacctggccctgctgggcaacct
ggaattccaggaccaccaggtcctgctggccatgctggatactgtgatccttcctcttgc
agccttcaggccattgctgctccccagtctgctaaagattccaacatgaaagggccttga
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