Bufo gargarizans (Asiatic toad): 122937854
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Entry
122937854 CDS
T07965
Symbol
SMARCC1
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122937854 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgar03021
]
122937854 (SMARCC1)
03036 Chromosome and associated proteins [BR:
bgar03036
]
122937854 (SMARCC1)
Transcription machinery [BR:
bgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122937854 (SMARCC1)
Chromosome and associated proteins [BR:
bgar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122937854 (SMARCC1)
PBAF complex
122937854 (SMARCC1)
GBAF(ncBAF) complex
122937854 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
DUF919
Motif
Other DBs
NCBI-GeneID:
122937854
NCBI-ProteinID:
XP_044148916
LinkDB
All DBs
Position
5:480900970..480921054
Genome browser
AA seq
1257 aa
AA seq
DB search
MIVSRCRHVFGDLRLEWACLSCDRQAMWAASLKIGTWSGRGVRVIGSRWGRVSRAAQAAA
AFPRQATSAAAMKQRQVGPGGPGGCNGSSGGDGRLAGSRQRRRRRRGGGAAGGEEGSPAT
RQYQQAGPRREEPRRDPEEEEDGEEEDEEEEEEEECDGEEEDGDGDSMAASAGGAAAPLA
QARRKDGGPVTKFWESPDTVSQLDGVRVWIGKNYKKYVQADSPTNKALAVLVSQLLQFQE
DAFGRHVTNPAFTKLPIKCFLDFKAGGALCHILGAAYKHRSDQGWRRFDLQNPSRMDRNV
EMFMAIEKTLMQNNCLSRPTVYLVPEIELKLANKLKDIVKRHQGTIIEEKAKASHHVYPV
PTSLDDDEWLRPVLKKDKQVLVHWGYHPDSYDAWIPVTDLDVDIEDPPIAEKPWKVHAKW
LLDTDVFNEWMNEEDYEIDENKKVTSFRQRVSLKTDEAVRSPERKDRKSVGSAKKRKRSP
SPQTPSESRKKPGKKSQGGLYGKRRWQKEEDEQEDLTKDMEDPTPVPNMEEVILPKNVNP
KKDSEHTPVKGGIVADLDDQEEEAVTASGKEDEDPSRGDQSRMVDNGEDNVTEQTNHIII
PSYAAWFDYNSIHVIERRALPEFFNGKNKSKTPEIYLAYRNFIIDTYRLNPQEYLTSTAC
RRNLTGDVCAIMRVHAFLEQWGLVNYQVDADSRPMAMGPPPTPHFNVLADTPSGLVPLHM
RTPQVPSAQQMLSFPEKNKDKPTDLQNFGLRTEVYSKKTLAKSKSASAGREWTEQETLLL
LEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSNSSLGPLAYQPVPFSQS
GNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVREEVPLELVEAHIKKVQEAAKALGKV
DPAYGLESSCIAGTTPEETEKPSESTEEEKMETETPEAPQTEKSEVKSEKENEPESCEKP
ESSAEKKPEEEESEPAPEDKTEEEMEETKENVETAKELDPVKKKLENDMNESNVAMAAAA
ALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQR
QQLLTERQNFHMEQLKYAEMRARQQMEQQQQQHGQNAQHPAAPSGPGMGHIAPPAHPGMM
GHLQQPPPQQPPPYGVHHQMPPAHPPQPGQMAGPSSMMSGPPMPGRIMPNMHPAGPPQPP
PQPGIPPMPSGMMVGPRPPMAPNGMYPAPAPPPQQQPPPPSDGPTPPPMVPTASSAP
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgattgtcagccgatgtaggcatgtcttcggtgatttgcgtctcgagtgggcgtgtctt
tcgtgtgatagacaggctatgtgggcggcatctttgaagattggcacctggagtgggcgt
ggcgtccgcgtgattggcagtcggtgggggagggtctcccgcgctgcacaggccgcagca
gcattcccccggcaagcaacgagtgcggcggcgatgaaacaaaggcaggtcgggcccgga
ggccccggtggctgtaacggcagcagcggaggagacggcaggctggcgggatccaggcag
aggaggaggcgccgccggggaggtggagcggccggcggggaggaaggcagcccggccaca
cgccagtaccagcaggccgggcctcgccgggaggagccccggagggatcccgaggaggaa
gaggacggagaagaggaggacgaagaagaggaggaagaggaggagtgtgacggggaggag
gaggacggcgacggggactccatggcggcatcggcaggaggggcggccgctccgctggct
caggcccgcaggaaggacgggggccccgtcaccaagttctgggagagcccggacaccgtg
tcccagctggacggcgtgcgggtgtggatcggcaagaactacaagaagtatgtgcaggcc
gattctccaaccaacaaagccctggccgtcttggtctctcaactcctgcagttccaggaa
gatgcattcggacgacacgtcaccaacccggccttcactaaactgcctattaagtgcttc
ttggactttaaagccggcggagccctgtgtcacatcctgggagccgcgtacaagcaccgg
agcgatcagggatggaggaggttcgatttgcagaatccatccaggatggatcgcaacgtg
gagatgttcatggccattgagaagacactgatgcagaacaactgtctaagccgaccgact
gtctacctcgtccccgaaatagagctgaagctggccaataaactgaaggacatcgtcaag
cgccatcagggtacaatcatagaagagaaagcgaaagcctcgcaccatgtttaccctgtc
cctacctcactggatgacgatgagtggctgagacctgtcttgaagaaggataaacaggtc
ctcgtgcattggggttatcacccggacagctacgatgcctggattcctgttacagatctg
gacgtggatatcgaggatccgccgatcgccgagaaaccttggaaagttcatgcaaaatgg
ctgctggacactgatgtgtttaacgagtggatgaacgaggaggactacgagatcgatgag
aataagaaggtgaccagcttccggcagagggtctccctgaagaccgatgaggccgtgcgt
agccctgagaggaaagaccggaagtctgtagggtctgcaaagaaacggaagcgctcccct
tctccacagacgccttctgaatcccgcaagaagccaggaaagaagagccaaggaggcctc
tatggcaagaggagatggcagaaggaagaggacgagcaggaggatctgacgaaagacatg
gaagaccccacccctgtccccaacatggaggaggtcatcctccccaaaaatgtgaatcca
aagaaggacagtgagcacacaccggtgaaaggtggcatcgtggcggatttagatgatcag
gaggaggaagcggtgactgcgagcgggaaggaagatgaagatcccagccgaggagaccag
agccggatggtggacaacggggaagataacgtgacggagcagacgaatcacatcatcatt
cccagctacgcagcctggtttgactataacagcattcacgtcatcgagcggcgggcgctt
ccagaattcttcaacgggaagaacaaatccaaaacgccagaaatatacttggcgtatcgc
aattttatcatcgatacgtacagactgaacccgcaggagtatctgaccagcaccgcctgc
aggaggaacctgacgggagacgtctgcgccatcatgagagtccacgcctttttggagcag
tggggcctcgtgaattaccaggtggatgcagactcacggcctatggcgatgggaccgccc
cctacaccccattttaacgtgctggcagacaccccatctggcctggtgcctcttcacatg
agaaccccacaggtgccgtccgctcagcagatgttgagtttccccgagaaaaataaagac
aagccaacagatctgcagaacttcggcctcaggacggaagtctactccaagaagacactg
gcaaagagcaaatctgccagcgctgggagggaatggacggaacaggagacgctgcttctc
ctagaggccctggaaatgtacaaagacgactggaacaaggtgtcggaacacgtgggaagc
cgcactcaggatgaatgcatccttcacttcctcagactccccatcgaggatccgtacctg
gagaactcaaactcttccctcggacctctggcctatcagcctgtgcccttcagccagtct
ggcaacccagttatgagcacggttgccttcttggcctcggtggtggaccccagagtcgct
gctgcagctgctaaagccgctctagaggaattctcccgagtgcgtgaagaggttcccctg
gagctggtggaggcgcacatcaagaaggttcaagaggcggccaaggctttgggcaaagtg
gatcctgcctatggactagaaagcagctgtatagcgggaacgacccccgaagaaacagag
aaacccagtgagtctactgaagaagagaagatggaaacggagaccccagaagcccctcaa
acagagaagagtgaagttaaaagtgagaaggaaaatgagcctgagtcgtgtgagaagccg
gagtcctccgcggagaagaaaccagaggaggaggagagcgagccggccccagaagacaag
acggaagaagagatggaggaaactaaagagaatgtcgagactgccaaggagcttgaccca
gtaaagaagaaattggagaatgatatgaatgagagcaatgtagctatggcagccgccgcc
gctctggcctctgcagccaccaaagccaagcatctggccgctgtggaggaacgcaaaatc
aagtccctggttgcgctgctagtggagacacagatgaagaaactggagattaaactacgt
cactttgaggaactggaaaccatcatggatcgggagaaggaagcgctggagcagcagcgg
cagcagctcctcaccgagcgccagaacttccacatggagcagctgaagtacgctgagatg
agggcccggcagcagatggagcagcagcagcagcagcacggacagaacgctcagcacccc
gccgccccctctggacctgggatgggccacatagcaccccctgcacaccctggtatgatg
ggtcacctgcagcagccgccaccacagcagccccctccatatggtgtacaccaccagatg
ccccctgcccacccgccgcagccaggtcaaatggcaggacccagctccatgatgtcagga
ccacctatgcctggacgaattatgccgaacatgcatcccgccggccccccacaacctcca
cctcagccagggattcccccgatgcccagcggcatgatggtgggaccgcgacctccgatg
gctccaaacggcatgtacccggctccagcaccaccaccacagcagcagccgcctccaccc
agtgacggaccaactccaccccccatggtgcccacagcatcgtctgcgccatag
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