Bufo gargarizans (Asiatic toad): 122939314
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Entry
122939314 CDS
T07965
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03015
mRNA surveillance pathway
bgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122939314
09123 Folding, sorting and degradation
03018 RNA degradation
122939314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122939314
03041 Spliceosome [BR:
bgar03041
]
122939314
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122939314
mRNA cycle factors
Stress granule specific factors
122939314
Spliceosome [BR:
bgar03041
]
Complex C
Other components
Complex C specific factors
122939314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
POP1_C
Motif
Other DBs
NCBI-GeneID:
122939314
NCBI-ProteinID:
XP_044151319
LinkDB
All DBs
Position
5:complement(88519170..88536879)
Genome browser
AA seq
759 aa
AA seq
DB search
MQTSAYSCNAASLYVGDLRTEITEAMLYERFGPVGNILSIRVCRDKITRQSLGYGYINFQ
QPADAERALDTMNFEDMKGKPMRIMWCQRDPSLRKSGVGNVFIKNLEKSIDSKLLYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQESSQNAINSLNGMILNDQKVFIGHFKSRKERE
PELVARAMFTNLYIKNFGENMDDERLRELFIKYGPTLSVKVMTDENGKSKGFGFVSFEKH
EDALRAVDEMNGKNVNGRSIYVGRAQKKSERQAELRRKFEQIKQERITRTQGVNLYIKNL
ADCIDDMRLHQAFSHFGIITSAKVMMDGGRSKGFGFVCFSSPNEAAKAVTEMNGRIIASK
PLYVALAQRKKDRQANLAAQFMQKMDHVRMVVNPVTNTYQALPPSYMAPVTQAQNHTVYY
PAGQMAQAMPSPSWTTQGMCSMHSFQNIPRAIRLAAPRLSTYGTMRPAPSAPHVVSVQRL
ATVPQAAIESQPTHVAAAATTASAVYSAPRYQYPAAVLHPQQHMIIQPQVAVQQNHLTPS
ILAPPPSPINQKQMLGERLFPLIQAMHPTLAAKITGMLLELDGSEVFHMLESPEFLRSKV
DEAVAMLQAHQQQTLAPQPTAAAVASSSVMCSAPQYQYTAAVVAPQQNIIIQPQVAVQQP
AVIQEESPATSILAPAPSGDQKQMLGERLFCLIQTMLPSLAAKITGMLLELDDLDVLHML
ESPEFLRSKVDEAVAVLQDHEAKQVVHQVMNNAAVVAAV
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgcagactagtgcttatagctgcaatgcagcgtctctctatgtaggggacctccgaacc
gagatcactgaggcgatgctgtatgaaaggttcggtcctgtcgggaacatactgtccatc
agagtgtgcagagacaagatcacccgccagtcactcggctatggttatatcaactttcag
cagccggcggacgcggaacgtgccctcgatacaatgaactttgaagacatgaagggcaaa
cccatgcgcattatgtggtgtcagcgcgacccgtccctacgaaagagcggggttggcaat
gtttttatcaaaaacctggagaaatccattgacagtaaattgctgtatgatacattttcg
gcttttggcaatatcctatcatgtaaggtcgtatgtgacgaaaatggatctaaaggctac
gggtttgtacatttcgagacccaggaatcgtcccagaatgccattaattcgttgaatggt
atgatcttaaatgaccagaaagtgttcatcggacatttcaagtcccgcaaagaacgagaa
cctgagcttgttgccagagcaatgttcacaaatctgtacatcaagaactttggggaaaat
atggatgacgaacggctcagggaactgttcatcaaatacgggcctacactgagtgtgaaa
gttatgactgatgagaatgggaagtccaagggattcggctttgtcagctttgagaaacat
gaggatgcactaagagctgtggatgaaatgaacggaaagaatgtgaatggtaggtccatt
tacgttggaagagcccagaagaaatccgaaaggcaagcggagctcaggaggaagtttgaa
caaataaagcaggaacgcatcacccgaacgcagggcgtcaacctctacataaaaaatctt
gcagattgcattgacgacatgcggctacatcaagcattttcccactttggtatcatcacc
agtgcaaaggtcatgatggatggtggacgcagcaaagggtttggtttcgtctgtttctcc
tcccccaacgaggccgcaaaagccgtcacagagatgaacggtaggatcatagcctccaag
cccttgtatgtcgccttggcgcaacgcaaaaaggatcgtcaagctaatctggccgctcag
ttcatgcagaagatggatcatgtccgaatggtagtgaacccggtcactaacacctaccag
gcactgccacccagctatatggcgcctgttacacaggcccagaaccacactgtatactac
ccagccggacagatggcacaggctatgccaagtccaagctggacaacccaaggtatgtgt
tcaatgcattcgttccagaatataccaagagcaatcagactagcggctcccagattatca
acctacggcacaatgaggcccgcgccttccgccccccacgttgtatcagttcaacgttta
gcaactgttccacaagcagcaattgaatcccagcctacccacgtcgctgctgcagccacc
acggcttctgctgtgtactctgctcctcggtatcagtacccagccgcagttcttcatcct
cagcaacacatgataattcagccacaagtcgccgtgcagcagaaccacctgactccctcc
atattggcgcctcctccttctccaatcaaccagaagcaaatgctgggtgaacgtctcttc
cctctgatccaagccatgcacccaactctagcagcgaagatcacaggcatgttgctggag
cttgatggctctgaagttttccacatgcttgagtcgccagaatttctccgctccaaggta
gacgaagctgtggcaatgcttcaagcccatcagcaacaaacactggcacctcaacccaca
gctgcagcggttgccagttcttctgtcatgtgctctgctcctcagtatcagtatacagca
gcagtggttgctcctcagcagaacattattattcagccacaggttgctgtgcagcagcca
gctgtcattcaggaagaatcaccagctacctccatactggcccctgctccttcaggcgac
caaaaacaaatgctgggggaacgtctcttctgtctaattcaaaccatgctcccttcgctg
gcagcgaaaatcacaggcatgttgctggagctggatgatttggacgttctccacatgctc
gagtcaccagaatttctccgttctaaggtggatgaagctgttgctgttcttcaagaccat
gaagctaagcaagtggtgcaccaagtcatgaacaacgctgcagtagtggcagccgtctaa
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