Bufo gargarizans (Asiatic toad): 122940176
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Entry
122940176 CDS
T07965
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122940176 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122940176 (PATL1)
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122940176 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
122940176 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
122940176
NCBI-ProteinID:
XP_044152540
LinkDB
All DBs
Position
6
Genome browser
AA seq
723 aa
AA seq
DB search
MLRCQSLEDGDGFPDLEEDEEIDQFNDDTFGTGAIDDDWREEHERLAEMEERMPSSHLLA
RSTSMSDPLGEQQEELEYSLSQLVKEIEEQSLPRGTPTLLSSRINSSIWDSSSHLQPIRG
PFLTEDMSPLSILHEYGLAPIPSSNRDNTDRDASERALPRRSTSPIIGSPPVRAVPIGTP
PKHVGPIFSQQQVLCPNSIHIRAASSPFNNHPSKPATLLRHSFPSALSPLQRAQLVGGAQ
AAPGRMSPSQFARAGGLHGPVMASVTPQILQGHVRSMVSAGGGVFRPFFGVPSAAAPGAH
LKNIRPPQLQFHPDTTHLHPQHRRLLHQRQQNRSQHSGVNGSGGDHSSRSSHTEAHRHDP
YAGLMLQREKEWVCRIQLLQLQSTDPYHDDFYYQNYFEKLEKLSSNQDRPSEGPRKERTK
LITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVATNRSDEEETREKQVRDKRR
QTLVVIEKAFSVLLELEDFERRFSLCCEHEEQEALNKERRQKLLQLCDILRVREGSERAA
EEQIVQIMCIRKGKRLVARIFPFLPLQECTSLISTAAHSLPFLIKKDVQDQMLPFLAAPC
AQVVGQLSGTALTSLLQCLCGSGVTSPQQQLTAVLQNKLGLTLLCQILDRGEELMSSECP
AALKQSLWTPLVAQVAHCFLQIQANSLPQLLCSPVTALLHFSRYLNEQSLGKLRSKFRLP
HSP
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgctacggtgtcagtctctcgaagatggtgatggcttccctgatctcgaggaggatgag
gagattgaccaatttaatgatgatacattcggaactggagcaattgatgacgactggcgg
gaggaacatgaacgtctggcagagatggaggagagaatgccctcttctcaccttttggcc
agaagtacttctatgagtgacccattgggagagcaacaggaagagctagagtacagtctt
agtcaacttgtgaaggagatagaagagcaatcgctgcctcgtgggacacccactctgctg
tcatccaggataaactcaagtatatgggattcttcctcacacctacagccaatcagaggg
cccttccttacagaggatatgagcccactgtccatactacacgagtatggcttggctccc
attccttcctccaaccgagacaatactgaccgagatgcctcggagagagctttacctcga
cgatccacctcacctattattggcagtccacctgtgagagctgtgcctattgggactccc
ccaaaacatgtcggcccaatattcagccagcaacaggttttatgcccgaattccatccac
attcgagcagcctcttcccctttcaacaaccatccgagtaaaccagcaacgcttttgaga
cactcgttcccttctgccctctccccacttcagcgagcgcagctcgtaggaggagctcag
gcagcacctggccggatgtctcccagtcagtttgctcgtgctggtggcctccatggtcct
gttatggctagtgtcacacctcaaattttacagggacatgtaaggtcaatggtttcagca
ggtggtggagtgttccgtcccttttttggtgttccctctgcagctgccccaggagcccat
ctcaagaatataaggcctccgcagttgcagttccatcccgatactactcacctgcaccct
cagcacagacgtttacttcaccagcgccagcaaaaccgtagccaacacagcggggttaat
ggctccggaggggatcactctagcaggtcctcacacactgaagctcatcggcacgacccc
tatgcaggtcttatgcttcagcgagagaaagagtgggtctgccgtattcaactcctccag
ctgcagagcacagacccctatcatgatgatttctactaccagaattactttgagaagttg
gaaaagctttcctccaatcaagataggccaagtgagggtcccaggaaagaaaggacaaaa
ttaatcacaccacaagtagccaaattggagcatgcctacaaaccagtgcagtttgaaggc
tctcttggaaagctgactgtatccagtgtaaacaacccacgaaagatgattgatgctgtg
gcaacaaatcgctctgatgaagaggaaactcgggaaaagcaagtgcgtgacaaaagacga
caaactcttgttgtcattgaaaaggcattttctgtactgttagagctggaagactttgaa
aggcgtttttctctctgctgtgaacatgaagagcaggaagcgctgaataaagaacgtaga
caaaaactgctccagctctgtgacatcctcagggttagggaaggaagcgagagggcagcc
gaagaacagattgttcagattatgtgcatccgaaagggaaaacgcctggtggctcggata
ttccctttccttcctttgcaagagtgcacatctttaatttccactgcagcccacagtttg
ccctttctcatcaaaaaggatgttcaagatcagatgctgcctttccttgctgctccatgc
gcccaagtggttggccagctgtctggaaccgcactcacttccctactacagtgtctctgt
ggatctggggttacatcccctcaacagcagcttacagctgttctccagaataaactcggc
ctgacccttctatgccagattcttgatcgaggtgaagagttaatgagttctgaatgccct
gctgcactgaagcaatctctttggacacctctggttgcacaagttgctcattgctttttg
cagattcaagcaaactccctgcctcaactcctatgctccccagtcacagctctgctccac
ttttcacggtacctcaatgaacagagtctcggcaaactacggtcaaagttcaggttgcct
cacagtccctga
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