Bufo gargarizans (Asiatic toad): 122940345
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Entry
122940345 CDS
T07965
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
bgar
Bufo gargarizans (Asiatic toad)
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122940345 (DDX60)
Enzymes [BR:
bgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122940345 (DDX60)
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
122940345 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
2H-SAK
Motif
Other DBs
NCBI-GeneID:
122940345
NCBI-ProteinID:
XP_044152908
LinkDB
All DBs
Position
1:complement(99398882..100045428)
Genome browser
AA seq
1752 aa
AA seq
DB search
MDSGGPNPENVAIHKVSADADTFEGKVTSNSRESVALSVPGTSGKVMSDSREPVDLSVPG
TSTKKKQKQSGFKKLTEIIARLSKDVIHQKSMYASLLNDYVESDVFVIDGDSLLLSCALD
KSLKKGQSLHFFFLVERFLLNFTDKGARYVVVFFQDMEPTYSQYPEIKSWRTQLIIHLEK
NANTTVYLFSNFHSSQWKSFLRDQSPYFLMVSDKGMNPQQTYFLNLLMLDSLGNNLDVVL
TAGQESDHLRVYGYHIISSLKTKTMITEMFNSAPKAIIRFQRHNSSNPLSELLKKMDWKE
QVQKSISLLPTHLKDARAITCVVACSMALRIHAEPKPIQDDNMRLTLEEASDLCKMQCLC
VALMITLPLSQRARIRRLNAKWNGIASSFISAYTSCEEYALTQMRDHIKNIIVDWTYVSD
ISDGLLLKNIAYYCEKEHYTECKLEFGNEINQLYQCLWETVLNLVPESEHLLCYELRKTS
KPFLSHDSSVQVERKEFLPVGLIPLRSDVIDDYAGDMIKELPVLNSEDPRIPSLMDTKTY
DELLHWHTDRPLSDDYDRTKCDQEDIRKDKYSQRNYQKLQTFQYRYGQSLGVKTPKKIVL
QEDQPEVKSSTHVTVVRKKEPQKKKKDQIIEENQKKSKAEEEKKEQVKWKNKVASLEKEI
MADFFSGLQNFENLIKSFRTPNVRYQAQLKALAICFDKWTEECKMKSKDERDIKIVVEIM
KIIQDIMDSNQDLFKKEDQYRIAGYLSKLGFDNLACSLRPDKLHDYKEEGTERKYAVGVG
STRFQLQYMGPHLLREERSDPDPRVQHFIPDTWQRELLDAVDNNESAVIVAPTSSGKTYA
SYYCMEKVLSQSNEAVVVYVAPTKALVNQVVATVISQFNKDLPGGIVLCGVFTRDYRTDA
LNSQVLVTVPQCLEILLLAPHRQEWVKRIKYVILDEVHCLGGEIGAETWDHILSMIRCPF
LALSATISNPEHLTEWLQSVQKYWQHNDDRKMSHMSESSHKGSKKKTAKTERRSYNVRLV
QYNKRYNDLEKYICSEKDSNLNFEHYHPCASLTIDHMKNCGIPKDLTFSPRESIQLYDCM
AAAWPQMANLKKLDPEENIHLKDKITITKNDATDYEEELKKEFVDWVQKGHDEQVAKVLE
SLKPMEPSEVECKKYFPQLVEKLDKMNKLPAIFFAFKLNLVEGLAEMVYEHLSEKWEMKQ
TEEEKKNIQKLEARAEKLQKSIQGTQTETSISRSPSKNEELMIKQAEYDSLIKKIEKFKE
IPSDCTYADVKAVDEKTLLQMYERTRRYSARHGDLIPFTRKGIGYHHGSVDAKGRQLVEM
LFRMGYVRVVTSTSSLALGINMPCKSVVFIQDSLYLDALNYRQMAGRAGRRGHDLLGNVY
FFNIPMPKVKKLLKSNVPQLRGQFPLSVSFILRLMLLATKADDKKDAKAKVLSILMHPLM
SFKRPQEAQVLKLYCIFSLQFLLYEGFLNQDCEPTAFTGLVTHLHYHEPSNFVFVRFLEK
GLFHKLCIPSLKDSTKFPDSVMETLVLILANLFGRRYLPRCRFPGEDIFDQSKVFLEKLP
KDFASVVNEHNQKVATVFGHCILAGSKVADMEKELQLPLSKTNFSGKECLNSGLVDHLMS
CYEGISGITPFACLSGNTDNDLMSMKNLSSLMMQTAHIPERYIPLLPFEKTDMFGRKRYL
NAYALDFFKHGSLDAIVEDNGFNPGDAYYVLRDFYLTIAAISVALNELCESDPVALAFEQ
LKTMYEEKLRVV
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atggactccggaggtccaaacccagagaacgttgcaatacataaagtatctgctgatgct
gatacttttgaaggaaaagtgacatctaatagcagagaatcagttgctctcagtgttcct
ggcaccagcggaaaagtgatgtctgatagcagagaacccgttgatctcagtgttcctggc
accagcacaaaaaaaaagcagaaacaatcaggttttaagaagcttactgaaatcatagct
agactctctaaagatgtcatacatcaaaaatctatgtatgcaagtcttcttaatgattat
gtagaatcggatgtttttgtcattgatggagattccctattattatcctgtgctttggat
aaatccctgaagaaaggacagagtttgcatttcttcttcttggtggaacgtttcttgctt
aattttacagacaaaggagcaagatatgttgttgtcttcttccaggacatggaaccaaca
tattcccaatatcctgagataaagtcctggcgtactcagttgataattcatctggagaaa
aatgcgaacacaaccgtatacttattctcaaactttcactcttcgcaatggaaatctttt
ctcagagaccagtctccttactttttaatggtttctgataaaggaatgaatcctcagcaa
acatattttttaaatctgctaatgttagattctctgggaaacaaccttgatgttgtgctt
actgctggacaggagtctgatcacctcagggtttatggataccacatcatatcttcactt
aaaaccaagacaatgataacggaaatgtttaactcagctccaaaagcaatcattaggttt
cagcgacataactcatccaaccctctctctgaacttctgaagaagatggactggaaggag
caggtgcagaaaagcatttcccttcttcctacacatcttaaagatgcccgggcaatcact
tgtgttgttgcatgttcaatggcgctgagaatacatgctgaacctaaacccatacaggat
gacaacatgcgcctgacattggaagaagcaagtgacttgtgcaaaatgcaatgtctgtgt
gtggcgctaatgatcactttgccactttcacagcgagcaagaataagaaggctaaatgca
aaatggaacggaattgcctcctcatttatttccgcatacacttcatgtgaagaatatgct
ttaactcagatgagagatcacatcaagaatattatagttgactggacctatgtctctgac
ataagtgatggtttactgctgaaaaacattgcatattactgtgaaaaagagcactacact
gaatgtaaactggaatttggtaacgaaataaatcaattatatcaatgtctctgggagact
gtattgaatttagtccctgaaagtgaacatttgctgtgctatgaactccgaaagacatca
aaaccttttctttcacatgactcttctgtacaagttgaaaggaaagaatttctacctgtt
gggttgataccactccgatctgatgtcattgatgattatgctggagatatgataaaggaa
ctaccagtattaaacagtgaagacccacgtattccctccttgatggacacaaaaacatat
gatgaacttttgcactggcatacagaccgtccactaagtgatgactatgacagaaccaaa
tgtgatcaagaagacataagaaaggataagtattcacaacgtaactatcaaaaactacag
acttttcaatatcggtatggacaatctttaggtgtgaaaactcctaagaagattgtattg
caggaagatcaaccagaagtgaaaagttctactcatgtgactgttgtaaggaaaaaggag
ccccagaagaaaaaaaaagatcaaataatagaagaaaatcaaaagaagagcaaagctgaa
gaagagaaaaaggagcaggtaaaatggaagaataaggttgcatctttggaaaaagaaatt
atggcagatttcttctctggattgcaaaactttgaaaacttaatcaaatctttccggaca
ccaaatgtgagataccaagcacagttaaaagcattagcaatctgctttgataaatggaca
gaagagtgcaaaatgaaatctaaagatgaaagagacataaagattgttgtggagataatg
aaaatcattcaggatatcatggacagtaaccaggacttattcaaaaaggaagatcaatac
cggatagctggttatctcagcaaacttggctttgacaaccttgcctgttcactgaggcca
gacaagttacacgactataaggaagaggggacagaaaggaaatatgcagttggagttggc
tcaactcgtttccaactccagtatatgggaccgcatttgctgagggaagagagaagtgat
ccagatccaagagtgcaacacttcattccagacacatggcagagagaacttcttgatgct
gttgacaacaatgaatctgcagtcatagtggccccaacatcttcaggaaaaacgtatgca
tcttattattgcatggagaaagttttgtcacaaagcaatgaagcagttgtagtttatgtt
gctcccactaaggctcttgtaaatcaagttgtagcgactgttattagtcagttcaataaa
gatctaccaggtggaatagttttgtgtggagttttcactcgtgattatcgcacagatgct
ttaaacagccaggtgctggtcactgtgccacaatgtttggaaattctcctgttggctcca
catcgacaagaatgggtgaaaagaatcaaatatgttatattggatgaggtgcattgctta
ggaggagaaattggagcagaaacctgggaccacatactatccatgattcggtgtccattc
ctggccttgtctgcaaccatcagtaatccagaacacttaaccgagtggctacaatcagtc
caaaaatattggcagcacaatgatgatagaaaaatgagtcatatgtctgaatcctcacac
aaagggtcaaagaaaaagacagcaaaaaccgaaagaagatcttacaatgttcgactagtt
cagtacaataaacgatacaatgatctggagaaatatatatgttctgagaaagactccaac
cttaactttgaacactaccatccctgcgcgtccttgacaatagatcatatgaagaactgt
ggaattccaaaggatcttacattctctccaagggaaagcatacagctgtatgattgcatg
gcagctgcatggccacaaatggcaaatttaaagaaattagatcctgaggaaaacatacat
ttgaaggacaagataactataacaaaaaatgatgcaactgattatgaagaggagctgaaa
aaagaatttgtggactgggtgcaaaaaggacatgatgaacaggttgcaaaagtgctggaa
agccttaaacctatggagccatctgaggttgaatgcaagaaatattttcctcagcttgtt
gaaaaactagacaaaatgaacaagctacctgctatattttttgcatttaaacttaattta
gtagaaggtttagcagaaatggtctatgagcatctaagtgaaaagtgggaaatgaaacag
actgaggaggagaagaagaatatccagaaacttgaagcaagagcagaaaaattacaaaaa
agtattcagggaacacaaacagaaacaagtatttcaagatcaccaagtaaaaatgaagaa
ctgatgatcaaacaagccgagtatgacagtttaattaaaaagattgaaaagtttaaagaa
ataccatctgattgtacttatgctgatgtcaaagctgtggatgagaagacattactgcaa
atgtatgagagaacaagaagatattcagcaagacacggcgatcttataccttttacacgt
aaaggaattggttatcaccatggctcagtggatgcaaaaggaaggcaacttgttgagatg
ctgttcaggatgggttacgtaagagttgtaacttctaccagttcacttgctttgggaatt
aacatgccatgtaaatcagtggttttcatacaagattctttgtatctagatgcactgaac
tacagacaaatggcaggaagagctggaagaagaggccatgacctgctggggaatgtctat
tttttcaacatccccatgcctaaggtgaaaaagctcttgaagtccaatgttcctcagttg
agaggacagtttcctctaagtgtttccttcattctcagattaatgttactagccaccaaa
gcagatgacaaaaaggatgcgaaggccaaggttctatcaattttgatgcacccacttatg
tcattcaaacgaccccaagaagcacaggtgttaaagctgtactgcatattctcactgcaa
ttccttctctatgagggattcctgaatcaggattgtgagcctactgcattcacaggactt
gttactcacctacattaccatgaaccatcaaattttgtgtttgtccgctttctagaaaaa
ggcttgtttcataaactgtgcataccaagcttgaaagattctaccaaatttcctgactct
gtaatggaaacccttgtgctgatattagcaaacctgtttggaagacgctacttaccacgc
tgcagatttccaggggaagatatatttgaccagtcaaaggtctttcttgaaaaacttcca
aaagattttgcttctgttgtcaacgaacacaaccagaaagttgccactgtatttggacat
tgtatccttgcaggttccaaagtggcagatatggaaaaggagctccagttaccactttca
aaaaccaatttttcaggtaaagagtgtttgaattctggattggtggatcacttgatgtcg
tgttatgaaggaataagtggtatcactccgtttgcatgtctctcaggaaacacagataat
gacttgatgagtatgaaaaacctgagcagtctgatgatgcaaacggcgcacattcccgag
agatatattccactgttgccctttgaaaaaacggatatgttcggacgaaaacgatacctt
aacgcctatgccctggatttcttcaaacacggcagcttggatgccattgttgaggataat
gggtttaatcctggagatgcatattatgtattgagggacttctaccttaccattgcagct
ataagtgttgctttgaacgaattatgcgaatcggacccagttgcattggcctttgaacaa
ctgaaaacgatgtatgaggaaaaactacgtgtagtataa
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integrated database retrieval system
