Bufo gargarizans (Asiatic toad): 122941116
Help
Entry
122941116 CDS
T07965
Name
(RefSeq) collagen alpha-1(XX) chain-like isoform X1
KO
K24357
collagen type XX alpha
Organism
bgar
Bufo gargarizans (Asiatic toad)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_3
Peptidase_C25_C
Motif
Other DBs
NCBI-GeneID:
122941116
NCBI-ProteinID:
XP_044154062
LinkDB
All DBs
Position
6:complement(270704851..270826418)
Genome browser
AA seq
1358 aa
AA seq
DB search
MTPPSCLLLFTAVFLQVVRSHQNPGIGRLRLSVLAEDRLQMKWREAEGLSNGYKVLVKPL
TGDPEQEVMLKTKTPKVTVGGLDPGKEYILQIHVIQGENDILIAKKRFIIDDLKAQFKTD
KKKPEITPTLRTYEMESSPSVRSSTSQTERTTESYHPVTLSTRPQGSGPEIKKYGSENET
MLPKISSKMERDVSATSGTLRRGSMHHCDTALEWDIILLVDSSWSVGRTNFRLVKNFLWG
ILSPLHISRDKIRIGLSQYSREPQTEWDLNTYSSKSEVLDAIKRVKYKGGNTFTGMALIH
VLDENLRAASGARSLAGKVLILLTDGKSQDDAITVSKSLKQSGIYIFAIGVKNADESELR
QIASEPTELTLHMVPDFPMLSSLVGDVSRALCMRLKERRREADFGSWNVAGTGLLDPHPS
PTQLVVSDVTAKSMRVSWTPPQQTVNKYRIVYYPSRGGTPQEVVLDGDSSSAVLVNLTSR
TDYLVSVFPIYISGVGAGLRGITSTLPLTAPRALSADQVTDSSMQLHWQPSEGATHYLVT
YSAETDQGLEVTENKVEDTKFSLSGLWPRTLHSVTVVAVSGEESSDPVTIQQRTEPVPRN
LDFTNITHSSVTVKWEKMPDDGPIQHVSYTPHTDGAQHGEIEVSDGSSSVTLKSLTSQTL
YTVTVTFQHRGPKTLTILTGNITTLKVPPPRGLKVLDLSGDKATVSWDPGADNVTSFIIK
WIPLSGGRLNQMSTVGSEQTAVLYDMEYSTEYQVSISARYMDGSQSDASSVRYNTGENLR
KMPIARGGFTLSRANDLCPLIEDKGMGNAFHGYNMMAVFGLDEKNYSSIRGVSLNTFVLG
GSRIYSIAENIQLTLWTREVHPNGLPPEHSLSFLLRLPPNAAQEPFAVWQITDEDFQPVM
GIILDPTKQSLTYFHPDNEGKLHEVTFDQEDIKKIFYGSFHKVQLAINRGNVKLHVDCQK
VAEKTVKTMGKLTTLGFEMLGKLTRTRGPRSGSSALELQSFLIFCTSQIPVGDRCCDVPA
KRDKDSCPAPPSACICTSDVQGPPGPPGLPGPPGPRGPKGEQGEDGPMGEAGVAGQMGPE
GVGGRMGSPGARGMMVTGPMGPPGMKGDKGDTGSPGLQGPPGLEGIPGRDGMMGPKGIRG
VEGISGMPGPPGPRGIQGLHGLKGNPGDGGPVGDVGPTGLPGTRGEKGEKGEPQAIATIY
HLVHQVCERLIQAHLIKLDAVLREQDIQPVPVWDTELKMGEPGPPGPPGPPGQQGEPGVN
GASGQPAKNGYQGERGHKGSQGEKGALGQGKEGPSGPPGAIGPPGTESFGNRGPIGSPGV
PGPPGAPGISGHYGTPGVTGDCHSSPCFPVAQDPNVIP
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccccatcctgtctgctcctgttcacagccgttttcctccaggttgtcagaagt
caccagaacccaggcatcgggcgattaagactatcagtccttgctgaagatagactacag
atgaaatggagagaggcagaaggactcagcaatggctacaaggtcctagttaaaccactt
acaggggacccagagcaagaggtaatgctgaaaaccaagacccccaaagtgacagtaggt
ggtctggatcctggaaaggaatatattctccagatacatgtgattcaaggagagaacgac
attctgatagcaaagaagagatttatcatagatgatttgaaagctcaattcaagactgat
aagaagaaaccagaaataactccaaccctgaggacctatgagatggaatcttccccatct
gtaaggagcagcacatctcagacagagagaacaacagaaagttatcacccagtcaccctg
agtaccagaccacaggggtctggtcctgaaattaaaaaatatggctctgaaaatgaaacc
atgttgcctaagatttcctccaaaatggaaagagatgtttctgctacatctggtaccctg
cgaagaggatcaatgcaccactgtgacactgcacttgagtgggacatcattttactggtt
gatagttcatggagtgtaggacgcactaacttccggcttgtgaaaaactttctctgggga
atacttagccccctccacatttcccgggacaagattcgcattgggctttctcagtacagc
agagagccacaaacagagtgggacttgaatacatattcttccaaatctgaagtcttagat
gccattaaaagagtgaaatacaaaggaggcaacacatttactggtatggcacttatccat
gtcttggacgaaaatctcagagcagcttcgggggcccggtccttggcagggaaggtatta
atcctactgacagatgggaagtcacaagatgatgcaattacagtttcaaaaagtctcaaa
caatcgggaatttatatatttgccattggtgttaagaatgctgatgaatctgagttgaga
caaatagcatcagagccaacagagctgacactacatatggtacctgacttcccaatgcta
agctccttggtgggggatgtgtctcgagctctctgcatgagactgaaggagaggaggagg
gaagcagattttgggtcttggaatgttgctggaacagggttgcttgaccctcatcccagc
cctacacagcttgtggtctcagatgtaacagctaagagcatgcgtgtctcctggactcct
cctcaacagactgtcaataagtatcgtatagtttactatccatcacgaggaggaactccg
caagaggtagtactagatggagactcttcttctgcggttctggtgaacttaacgtctcgt
acagactacctggtgtctgtgttccccatctatatcagtggtgtgggtgcagggcttcgt
ggaatcacctcaaccttaccactgacagctccccgtgctctctctgcggatcaagtgaca
gactcatccatgcagttacactggcagccatcggagggagccacacactacctggtgacc
tactctgcagagactgatcagggtttggaggtgacagagaataaggtggaagacacaaag
ttctctctgtctgggttatggcctaggaccctgcatagtgtaactgtagtggcggtgtct
ggggaggagtccagtgaccctgtcacaattcagcagaggacagaaccagtaccccgaaac
ctagacttcacaaatatcacacacagctctgtcactgtcaaatgggaaaagatgcccgac
gatggaccgatccagcatgtgtcatatacccctcacacagatggtgctcagcatggagag
attgaagtatctgatggaagctcctctgtgaccttgaagtcgttgacctcacagactctc
tacactgtcacggtcactttccaacacagaggtccaaagaccttgactatactgactgga
aacatcacaacgttgaaagttccgccccctagaggtctgaaagtattagatctttctggc
gacaaagcgactgtatcatgggatccaggagcagacaatgtgacttcctttataatcaag
tggattccactgagtggaggaagactaaaccagatgtccaccgttggcagtgagcaaaca
gctgtgctgtatgatatggagtatagtacagaataccaggtatccatatctgcacggtac
atggatggatctcagagcgatgcatcttctgtacgctacaatacaggagaaaatctgagg
aagatgcctatagcccgtggtggattcacactgagccgtgcaaatgatttgtgtccactg
atcgaagacaaaggaatgggcaacgcttttcatgggtacaatatgatggcggtatttggc
ttggatgagaaaaattactcttccattagaggggtatccctcaacacctttgtattagga
ggttccaggatctattcaattgctgagaatatccagctgaccttatggaccagagaagta
catcccaatggacttcccccagaacacagcctgagcttccttcttcgcttgccaccaaat
gcggcccaggaaccctttgctgtgtggcagataacagatgaagattttcagcctgtcatg
gggattatcttggacccaactaagcagtctctgacatatttccaccctgacaatgagggc
aaattgcatgaggtgacctttgatcaagaagacataaagaagattttctatggaagtttc
cataaggtacaattagctattaacagagggaatgtcaagctccacgtggattgtcagaag
gtggcagaaaagacagtcaaaactatggggaagttgaccaccttagggtttgagatgttg
ggcaaactaacaagaactcgaggtccaaggagtggttcctcagcactggagctccagtca
ttcctcatattctgcacttcgcagattccagtaggagacaggtgctgtgatgttccagct
aagagggataaggacagctgtccagctccaccttctgcctgcatctgcacctcagatgtt
caaggacccccggggccccctggacttcctggaccaccaggtcctcgaggacccaaaggg
gagcagggtgaagatgggccaatgggtgaagctggagtagctggacagatgggtccagag
ggtgttggagggcgaatgggatctcctggagctcgtgggatgatggttactggaccaatg
ggacctccgggtatgaaaggagacaagggggacacaggaagtcctggactgcagggtccc
cctggtctggagggcatcccaggaagagatgggatgatgggacccaagggtatacgaggt
gtggaggggatatctggaatgccaggaccaccaggacctcggggcatacaaggacttcat
ggtctcaaaggcaaccctggtgatgggggtccagttggtgatgttgggcccacgggtctt
cctggaacccgtggagagaagggagagaagggggaacctcaggccattgcaacaatttac
cacttggtgcatcaggtgtgcgagagactaattcaagctcatttgataaagctggacgcg
gtgcttagagaacaagatatacagcctgttcctgtgtgggataccgaattaaaaatgggg
gaaccagggccaccaggacccccagggccaccagggcaacaaggagaaccaggtgttaat
ggggcatcaggacaaccggctaaaaacggatatcaaggagaaagaggtcacaaaggatct
caaggagagaagggtgctctagggcaagggaaagaaggaccctcaggacctccaggtgca
attggtccaccaggaacagaaagttttggaaatcgtggccctataggttctcctggggtt
cctggtcctcctggagctcctggtatttctggccattatggaactcctggagtaacagga
gactgtcattcatcaccatgctttccagttgctcaagatccgaacgtcattccctga
DBGET
integrated database retrieval system
