Bufo gargarizans (Asiatic toad): 122943560
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Entry
122943560 CDS
T07965
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar04115
p53 signaling pathway
bgar04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122943560 (COP1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
122943560 (COP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bgar04121
]
122943560 (COP1)
Enzymes [BR:
bgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122943560 (COP1)
Ubiquitin system [BR:
bgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122943560 (COP1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122943560 (COP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
zf-C3HC4_2
Beta-prop_EIPR1
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_2
zf-RING_UBOX
Beta-prop_EML
Beta-prop_DCAF4
zf-C3HC4_3
zf-RING_5
Beta-prop_WDR90_POC16_2nd
zf-C3HC4_4
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
zf-rbx1
WDR90_beta-prop_4th
zf-RING_10
zf_C2H2_10
zf-RING_11
Sina_RING
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
122943560
NCBI-ProteinID:
XP_044157331
LinkDB
All DBs
Position
7:complement(57226329..57415150)
Genome browser
AA seq
684 aa
AA seq
DB search
MSSGRPSQQLPGPGGGTGPSSSSSSSSAPSSSSSSTGPLRPVASSMSRLGVTGNGSALTV
RPVSSGPRKRPLPTPLCNGLINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQS
LEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFDDKRLKLDPSNGHRWQIFQDLLV
TDQDNLDLANVNLMLQLLVQKKRQLEAESHAAQVQILMEFLKVARRNKREQLEQIQKELS
VVEEDIKRVEEMSGLYSPRSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGNSQTKKQP
WYNSTLASRRKRLTAHFEDLEQCYFSTRMARASDDSRTVSQLDEFQECLSKFTRYNSVRP
LATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEM
TCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPK
LLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPTSRYHLAFGCADHCVHYYDLRN
TKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVTRPHCLRSFKGHINEKNFVG
LASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRA
LPDGESNVLIAANSQGTIKVLELV
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgggccggccgtcacagcaacttcccggaccgggaggtgggacaggcccatcc
tcgtcttcttcatcctcctccgccccgtctagttcctcttcttcgacggggcccctgagg
ccggtagcttccagtatgtccaggctcggagtgacgggcaacggctcggcgctgactgta
aggcccgtgagttcgggaccaagaaagaggcctctccctaccccactctgcaacggactc
atcaactcctatgaggacaaaagcaacgactttgtgtgcccaatatgttttgatatgatt
gaggaagcctatatgacgaagtgtggacacagcttttgctacaaatgcatccatcaaagt
ctggaggacaataaccgctgcccaaagtgtaattacgtggtggataacattgaccatctc
tacccaaattttctagtaaatgaacttattctaaaacagaagcagagatttgatgacaag
cggctgaagctggacccatcgaatggtcaccgatggcagatcttccaagaccttctggta
actgatcaagataatctggatctagccaatgttaacctgatgcttcagctcttggtacag
aagaagaggcaacttgaagcagaatcgcatgccgctcaagttcagatcctaatggaattc
ctgaaagtagcgcgacgaaataagagagagcaattggagcagatccagaaggagctgagt
gtggtggaggaagacataaagcgtgtagaggagatgagcggcttgtattccccccgcagt
gaagacagcactgtgccacagtttgaagccccttccccatcacacagtagcataatcgac
tccacagaatacagtcaaccccctggattcagtggaaattcccaaacaaaaaagcagccg
tggtataacagtacgctggcatcgcgtcggaaacgcctcacagcacattttgaagacttg
gagcagtgctacttttctaccagaatggctcgtgcgtcagacgacagtcggacagtgagt
cagttggatgagtttcaagagtgtttatccaaatttacccgatataattctgtgcgtccc
ctcgctaccctctcctacgccagcgatctttataatggctccagcattgtatccagcata
gagtttgacagagactgtgactactttgccattgccggtgtgaccaagaagatcaaagta
tacgagtatggcactgttatccaagacgctgtggatatccattacccagagaacgagatg
acctgcaattctaaaatcagctgtataagctggagcagttaccacaaaaacctactggcc
agcagcgattacgaagggactgtgattctctgggacggttttacagggcagagatccaaa
gtataccaggaacatgaaaagagatgttggagtgtggattttaacctcatggaccccaaa
cttctggcgtccggctctgatgatgccaaagtaaaactatggtctaccaacctggataat
tctgttgctagtattgaagccaaagccaatgtatgctgtgtgaaatttagtcccacttcc
cgttaccacctggcatttggctgtgcagatcactgtgtccactattacgacctccggaac
actaaacagccaatcatggtgtttaaaggacatcgcaaagccgtctcttacgccaaattt
gtcaacggggaggagattgtctctgcatcaacagacagtcagctgaagttgtggaacgtc
accagaccacattgcctacgctccttcaagggtcacattaatgagaagaattttgttggt
ttggcatctaatggagattatattgcctgtggaagcgagaacaactccctctacctgtac
tataaggggctctcaaaaacccttctgactttcaagtttgacactgttaagagtgtattg
gacaaagatcgcaaagaagacgacaccaatgagtttgtgagcgctgtgtgttggagggct
cttcctgatggggagtccaatgttcttattgctgctaacagccagggcacaatcaaggta
ctggagctggtatga
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