Bufo gargarizans (Asiatic toad): 122944774
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Entry
122944774 CDS
T07965
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122944774 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122944774 (PARN)
Enzymes [BR:
bgar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122944774 (PARN)
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122944774 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
YqeH-like_C
Motif
Other DBs
NCBI-GeneID:
122944774
NCBI-ProteinID:
XP_044159321
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All DBs
Position
8:complement(149654132..149770520)
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AA seq
633 aa
AA seq
DB search
MEITWRNFKEHLPTVCQAIAEADFLAIDGEFSGISDGPSFTALTNSLDTPEERYKKLKEH
SMEFLLFQFGLCTFKYDDTEAKYIIKTFNFYIFPRPFNRHSPDKKFVCQSSSIDFLANQG
FDFNKVFRDGIPYLNQEEERQLRDQQEDKRYHTNGASTTSYLYVSPDAPRAPVAPVIPED
QKDFIDNIVGSVDEFLKDEEKKVLQLEPCTGYQRKLIYQTMNWKFPKGTHVETVESPNNE
RHMIITKVDEDERKTKELQKKAKEQEDLNDAVGFSRVVQAISSSGKLVVGHNMMLDVMHT
ISQFYCHLPEDLEEFKRLTNCVLPRVLDTKLMASTQPFKAIISHTVLAELEKRLQLPPFK
PPQVESAEDFPSYDTKAGQLHEAGYDAYITGLCFITMADYLGSFLSPPQTHVAAQSDVIS
PFFNKLFLMRITDIPYLNLDGADLLPTRDNVLHVTFPKEWKASDLYQLFSAFGKILVSWI
DDTSAFVTLTQTDQVQIAVNISRFAESYCVQTYAEYIAKKERPGLVKRKRTDDGWMDFER
KRPKTQYTYVAQNSRYHYSSSVDQPFSKKRSIDAVEEEADSVNPEESEGQGGEDAPSPTA
SDSANSSKHKIDTDQAECSNSVSSEEFELVHAW
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcacctggcgcaattttaaggaacacttaccgacagtttgtcaggctattgca
gaggcagacttcttggctattgatggagaattttcagggattagtgacgggccatctttc
acagctttaacaaatagtttggacacaccggaggagagatataagaagctgaaggagcac
tctatggagtttctgttatttcagttcgggctgtgcacctttaagtatgacgacacggaa
gccaagtacatcataaaaacatttaatttttatattttcccaagaccattcaatagacat
tcgccagacaagaagtttgtttgtcagagctcgagcatagattttctagctaatcagggt
tttgattttaacaaagtatttcgtgacggtattccatacttgaaccaagaggaggaaaga
cagctcagagatcagcaggaggataagcgttaccacacaaatggtgcgagcacgacgagt
tacctgtacgtgtcacctgatgcacccagggctccagtcgctcctgtcattcctgaggat
cagaaagattttattgataacattgtagggtctgttgatgaatttttaaaagatgaagag
aaaaaagttctacagctagaaccttgtactgggtatcagaggaagcttatctaccagaca
atgaactggaagtttcctaaaggcacccatgtggaaactgtagagtctccaaataatgaa
aggcacatgattattaccaaagtagatgaagatgagcggaagacaaaagagctgcagaaa
aaagccaaagaacaggaagaccttaatgatgctgttgggttttctagagttgttcaagca
atttcatcctctggtaaactcgtggttggacacaacatgatgttggacgtcatgcacacc
ataagtcagttctactgtcatctacctgaagacctggaagagtttaaaaggttgacgaat
tgtgttttaccaagagtgctggacactaagcttatggcctctacacaaccctttaaggcg
attatttcacacactgtcctcgccgaactggaaaagagattacagttgcctcctttcaaa
cctccacaagttgagagtgctgaagattttccaagttatgatacaaaggcaggacaactt
catgaagctggatatgatgcctacatcacaggactgtgctttatcaccatggcagactat
ctaggttcatttttaagcccaccgcaaactcatgttgcggcccagtctgatgtgatcagc
ccattctttaacaagctttttttgatgagaattacggacatcccatacctcaatctggac
ggtgcagacttgctccccacgcgcgataatgtcctccatgtgacatttcctaaagaatgg
aaagccagtgacctttatcagctgttcagtgcctttggtaaaatcctggtctcttggatt
gatgatacttcagccttcgtaacactgacacagacagatcaagtgcaaatcgctgtaaac
atcagcagatttgcagaaagctattgtgtccaaacatatgcagagtatattgcaaaaaaa
gagagaccaggccttgttaaaagaaaacgtactgacgatggatggatggattttgaaagg
aagaggccgaaaactcagtacacgtatgttgcacaaaactcaagatatcattactcaagc
agtgttgatcaacctttttcaaaaaagagatctatagatgctgtagaggaagaagccgac
tctgtcaatccagaagaatcagaaggccagggaggagaagatgcacccagccccacagct
tcagattcggcaaatagtagcaagcacaagatagacactgatcaagcagagtgcagcaac
agcgtctcctctgaagaatttgaactggtgcacgcttggtag
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