Bufo gargarizans (Asiatic toad): 122945601
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Entry
122945601 CDS
T07965
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bgar
Bufo gargarizans (Asiatic toad)
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bgar04147
]
122945601 (COL18A1)
00535 Proteoglycans [BR:
bgar00535
]
122945601 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
bgar00536
]
122945601 (COL18A1)
Exosome [BR:
bgar04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122945601 (COL18A1)
Proteoglycans [BR:
bgar00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122945601 (COL18A1)
Glycosaminoglycan binding proteins [BR:
bgar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122945601 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Motif
Other DBs
NCBI-GeneID:
122945601
NCBI-ProteinID:
XP_044160642
LinkDB
All DBs
Position
8:46817859..46987195
Genome browser
AA seq
1618 aa
AA seq
DB search
MAVTWVWAVVAVLMVTSPAPSHAQMFNWFGWGAKPTTASTTIPTTNPAVLTTSEAALLPD
ASPAEQKSLPEAVTVTDQKTFYTDTNQMSPSTLLPDLTTSVSSSSQLAATESSPAVSKPP
QSNKTFTQASPSKLTTPAQHPLPASLKNHKHMTESSLRNPPEENLFSIFQVEINGESVVE
ITAPTSKDVSTSVSEASTAQNLDKENIAGVGAEILNVAENIRSLMNVWLEKPENDLHTST
GPTPDQQEMTNVSTSAVQINGTDNLNLPGSRKNDENMTETHTYIHLSGSSNQTFNISARN
QEMANAIAPTVQISEMDNLNLPGSEQKEESTIKTHTYNQSSGSGSQTFNISARNLTSPGR
ATVEVGLLQLIGDPPPEQITKIFGPDKNPGYVFGEEANTGQVAQYHLPNPLFRDFSILFH
IQPTTNKAGMLFSITDTSQSIVYIGVKLTEVKAGKQQIIFYYTEPGSPVSFPAATFTIGA
LTNLWTRFAIGVEDEEVVLFMNCDEVERTRFERSPDEMELEEGSGLFVAQAGGADPDRYQ
GVIAELKIINDPRAAEMQCDEDGDDSDVISGDFGSGIPEREIVEVVTKAPTRLKEQAPIT
VPPIQRPSLEKETIVQRVKVEGQPAQNGQKGDRGEKGDRGPEGPKGGSGTSTSSGVVTKG
EKGQKGEAGLKGSAGFAYPGTKGDKGDSGSPGVAGPPGPPGQPVLQSREGSTVQQVPGPR
GPPGPQGPPGADGEPGDPGEDGKAGEIGPQGFPGTPGDPGLKGEKGDPGVSIRGLPGPPG
PPGPAGPATKMDKLTFIDMEGSGSGSGVENIRGPPGPPGPPGVPGLPGVPGQFGTNTTGI
PGPPGLPGNPGQNGMHGPPGPPGPPGKDGIPGISGLAGERGIDGEIGLPGAPGPKGKDGD
PGIPGTPGEMGLAGLPGPIGPRGIPGPPGPPGPAGPGLGVGFDDMEGSGFGFGGRGVAGP
QGQTGKPGLPGSKGDRGIPGLDGRPGLDGFPGPEGPRGEKGDTGERGEPGRDGIGLPGPP
GPPGQIIYSDSRAIAGGIEREEARDIGPQGPRGYKGEQGDQGYPGLPGIKGEKGDPAMIM
GPDGTLLVDSPRILKGDPGPRGPQGPMGPEGQPGQKGEIGFPGRAGRPGMNGLKGEKGDP
ADPTGFGRGAPGPPGPPGPPGNNVYSDQGAVGPQGYPGQKGERGFPGSKGDQGDVGPAGP
PGSFPYDLRDIANWALKGEKGEPAGGYDQGIPGPPGNPGYPGLPGAKGDSIQGPPGPQGP
PGPPGVGYDGRQGSPGPPGPPGPPGPQSYPGPNRPALSIPGPPGPPGPPGSPGGSGGYST
ATVLHTFQTMLHLGQTLQEGTIILVLDQSELYVRVRNGFRKILLGDYVTLNGNGQGNEVA
AEQPPVIHYPSGNRDSGYYQSTDEHVPPPHPPRPEPPPQVFPRPAEPERNVPAVHTHQEY
QAALHLVALNAPLSGSMRSIRGVDFQCFEQARKAGLHGTFRAFLSSRLQDLYSIVRKADR
LNVPIVNLRDETLLDSWESLFSVSEGQMKPGARIYSFDGRDVVTDSTWPQKMIWHGSDTK
GRRLAENYCETWRTDESIVTGQASSLLSGKLLEQRSQSCNKNFIVLCIENSFTFTGQK
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgacatgggtctgggctgtggttgctgtcctgatggtgacttcacctgcacca
tcacatgcacagatgtttaattggtttggatggggagcaaagccaacaactgcttccacc
acaattcccaccacgaaccctgcagttttgactacatctgaagcagctcttctacctgat
gcatcaccagctgaacaaaaaagtcttcctgaagcagtaaccgttacagaccagaagacc
ttttatacagatacaaatcagatgtcaccttctacattgctgcctgatctcacaacttca
gtatcttcatcatcacagctagcagctacagaatcttcacctgcagtgagtaaacctcca
cagtctaataagaccttcacccaagcatctccaagcaagctgaccacaccagcacagcat
cccttaccagcctccttgaaaaatcacaagcatatgacagaatcttctctgagaaatcct
cctgaagaaaacttattcagcatttttcaggtagagataaatggtgagtctgttgttgag
attacagcacctacatctaaggatgtatccacctctgtgtctgaagcttcaactgctcag
aacctggacaaggagaacattgctggtgtgggggctgaaatcctaaatgttgctgaaaat
attcgaagcttaatgaatgtttggttagaaaaacctgaaaatgatttgcacacctctact
ggtcctacacctgatcaacaagagatgacaaatgtgagtacctcagctgttcagataaat
gggacagataacttaaatctgcctggttctaggaagaatgacgaaaacatgactgagacc
cacacatacattcatctttctggttccagtaatcagacttttaacatcagtgcaagaaat
caagaaatggccaatgcaattgccccgactgttcagataagcgaaatggacaacttaaat
ctgcctggctcggagcagaaagaagaaagcaccattaagacccacacatacaatcagtct
tccggttccggtagtcagacttttaacatcagtgcaaggaatcttacgtcaccaggccgt
gcaactgtagaggttggtctcttacaactcatcggagatccaccgccagaacagatcacc
aagatctttggtcctgataagaaccccggctatgtatttggagaagaggccaacacaggc
caagtggcccaataccatctccccaaccccttatttagagacttttctattctgtttcac
atccaaccaacaactaacaaggctgggatgctgttctctatcactgatacctcacaatcc
attgtctacattggggtgaagttgactgaggtcaaagctggtaagcagcagattattttt
tactacacagagcctggatcaccagtatctttccctgccgccaccttcactattggagca
ctgactaacctatggacacgctttgccattggtgtggaggatgaggaagttgtgttattc
atgaattgtgatgaagtggagaggactcggtttgagagatctcctgatgagatggagctg
gaagagggttctggactttttgttgcccaggctggaggcgcagatcctgatcgctaccag
ggagtcattgccgaactaaagatcataaatgatcccagagcggcagaaatgcaatgtgat
gaggatggagatgattctgatgtgatttctggagactttggcagtggcatcccagagaga
gagattgtggaggtggtgaccaaggctccaacaagactcaaggaacaagctcccatcaca
gtacctcccatacagagaccatctttggaaaaagagactattgtacagagagtgaaagta
gaaggtcagccagcccagaacggacagaaaggagaccgaggcgagaagggtgatagaggt
cctgaaggtccaaaaggtggaagtggtaccagtacaagctcaggtgttgtcactaaagga
gaaaagggccagaaaggagaagctggacttaaaggtagtgcaggatttgcatatccagga
acaaagggagacaaaggagactctggatcccctggtgtagccgggccacctggtcctcca
gggcaaccagtattacagagcagagaaggcagcactgtacagcaagttccaggacctcgg
ggacctcctggtccacagggacctccaggagcagacggagagcctggtgaccctggagaa
gatggcaaagctggtgaaattggacctcagggattcccaggaacaccaggagatcctggt
ctgaagggagaaaagggtgatccaggagttagtattagaggtctaccaggaccaccagga
cctccaggcccagctggcccagccaccaaaatggataaattgacattcattgacatggaa
ggttctggatctgggtcaggtgtagaaaacatcagaggaccacctggtccacccgggcct
cccggtgtacctggattgccaggagtaccaggacagtttggaacgaacaccacaggaata
cctggcccccctggcctacctggtaaccctggacaaaatggaatgcacggcccccctggt
cctccgggacccccaggaaaagatggaatcccagggatttccggacttgctggtgagagg
ggtatagacggtgaaattgggcttccaggagctcctggaccaaaaggaaaagatggggat
cctggaattccaggaactcctggagaaatgggcttagcaggacttcctggaccaatagga
ccacgtggaatacctggacccccagggcctcctggtcccgctggacctggattaggtgtt
ggatttgatgatatggaaggttctggatttggttttggtggtcgtggagttgcgggccca
cagggacaaacagggaaaccaggacttccaggctcaaagggagatcgtggaattccaggt
ttggatggaagacctggacttgatggattccctggtcctgagggtccaaggggagaaaag
ggggatacaggagaaaggggagaacctggtcgtgatggcattggacttcctggaccacct
ggacctcccggtcaaatcatttacagcgatagcagggcgattgctggaggaatagagaga
gaagaggctagagacattgggccccaaggacccaggggatacaaaggtgaacaaggtgat
caaggttatccaggactgcccggaattaagggagagaaaggtgacccagcaatgattatg
ggacctgatggcaccctacttgtggatagcccgagaatattgaagggagacccaggacca
agaggtccacaaggaccaatgggacctgaaggccaaccaggacagaaaggtgaaattgga
ttcccaggaagggccggtcgtcctggtatgaatggactgaaaggagagaaaggtgatcct
gcagatcctactggttttggaaggggagcaccaggacctcctggaccacctggtcctcca
gggaacaatgtatacagtgatcagggggctgttgggccacaaggatatccaggtcagaaa
ggggagcgaggatttccaggatcaaaaggtgatcagggagatgttggccctgctggccca
ccaggaagtttcccatatgatttgagagatatagcaaattgggcattaaagggagagaaa
ggagaacctgcaggaggatatgaccaaggaataccaggtcctccaggtaatcctggatat
ccaggactgccgggcgctaaaggagacagcatccaaggtcctccaggtccacagggtcct
ccaggacctcctggcgtgggatacgatggaagacagggatcacctggacccccaggacca
ccaggacctcctggacctcagtcatatcctggacccaacagaccagctttaagcattcca
ggaccaccaggacctccagggccacccggatctccaggagggtcaggtggatattctaca
gctacagtactgcatactttccagactatgcttcacctgggccagactttgcaggaaggg
accattatactggtgctggaccaatcagaactatatgtgcgagtcaggaatggattccga
aaaatacttcttggtgactatgtaacactgaatggtaacggccagggtaatgaagttgct
gcggaacaaccacctgttattcattatccttctggcaacagagattcaggatattatcag
tctacagatgagcatgttcctccacctcaccctccacgacctgagccaccacctcaagtc
tttcccagacccgcagagccagagagaaatgtccctgccgtccacacacaccaagagtac
caagcagcgttacatcttgtggcattaaatgccccactaagtggcagcatgcgttccatc
cgcggggttgacttccagtgctttgagcaggcgcgtaaagctggacttcatggaacattc
cgggcattcctatcatcacggctacaggacttgtacagcatagtccgtaaagctgacaga
ctcaacgtgcccattgtcaatcttagggacgagacactgcttgacagctgggaatcacta
ttttcggtttctgagggacagatgaagcctggggctcgaatctattcatttgatggacgg
gatgttgtaacagattctacttggccacagaagatgatctggcatgggtcagacaccaaa
ggtcgccgtctcgctgagaactactgtgaaacctggcgtacagatgagagcatagtgacc
ggccaagcgtcatctctattaagtgggaaactcctagagcagcgttctcagagctgcaac
aagaactttattgtcctgtgcattgaaaacagcttcacgttcacaggccagaaataa
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integrated database retrieval system
