Bufo gargarizans (Asiatic toad): 122946436
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Entry
122946436 CDS
T07965
Symbol
PRPF4
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122946436 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bgar03041
]
122946436 (PRPF4)
Spliceosome [BR:
bgar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122946436 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
PRP4
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
WD40_RFWD3
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
122946436
NCBI-ProteinID:
XP_044162006
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All DBs
Position
9:complement(189891054..189904073)
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AA seq
506 aa
AA seq
DB search
MSDDEGAPVVKRSRIFYGSLADKEKERISRGEFSLGRTAVKAGIEAGNINIGGGESFDLD
EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNV
LSVVGTDALKKTKKEDEKAKASREEYQHTWYHEGPNLLKSARLWIARYSLPRAAQRLENA
REYRMIPESIRTSQKQDLNNDLRSVNNFCSQIGDDRPLSFCHFSPNCKLLATACWSGLCK
LWSIPDCQPIRTLRGHNANVGAIVFHPKSTVSLDEKDVNLASCAADGSVKLWNLESDEPV
ADIEGHTVRVARVTWHPSGRFLGTTCYDKSWRLWDLEAQEEILHQEGHSKGVYDLAFHSD
GSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYSVNFSPNGFHIATGSGDNTCKVWDL
RQRRCIYTIPAHQNLISAVKFQPTNGHYLLTGAYDNTAKIWTHPLWSPLKTLAGHEGKVM
AVDISSDGELIATCSYDRTFKLWMTE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgatgagggcgctcctgtggtgaagaggtctcgtattttctatggcagcctg
gcggataaagagaaggaacggatctccaggggggagttttcattggggagaacggcggtg
aaggccgggatcgaggccgggaacatcaacatcggaggaggggagtcctttgacctagat
gagcacatcagtgagaggcaggcggaggtcctcgccgagttcgagcgtaggaagcgagcg
cgacagatcaatgtgtccactgacgactcggaggtgaaggcctgtctgagggccctcggg
gagcccatcactctttttggagaggggcccgcggagcggagagagaggctgcgaaatgtc
ctctccgtggtcggcacagacgccctgaagaagacgaagaaggaagatgagaaagccaag
gcatcgcgtgaagagtatcagcacacctggtatcatgaggggcccaacttgctgaaatcc
gcacgactgtggatagcgcgatattctttaccacgtgccgcacagcgactggaaaacgcg
cgagaatacaggatgatcccagaatccatcagaacatctcagaaacaagatctgaacaat
gatctgcgatccgtgaacaatttctgcagtcagatcggagatgatcgccctctgtccttc
tgccactttagtcccaactgcaaactcttggcgacggcgtgctggagcggactctgcaaa
ctttggtcaattccagactgtcagcccatacggactttaagagggcacaatgcaaacgta
ggcgccatagtctttcatcccaagtccacggtgtcgctggatgagaaggacgtaaatctg
gcgtcctgcgccgcagatggctctgtcaaactgtggaacctggagagtgatgaaccagtt
gcagatattgaaggacatactgtgagggtggcgagagtgacgtggcatccatctgggcgt
tttctgggcaccacatgctatgacaaatcctggcgcttgtgggacctggaggcgcaggag
gagattctgcatcaggagggtcacagtaaaggagtatatgacctcgccttccacagtgac
ggctcccttgctggtaccggaggtctggacgcctttgggcgagtgtgggatttgcggact
ggtcgctgcattatgttcctagaaggtcacctcaaggaaatctacagcgtcaacttctcc
cctaatgggtttcacattgctacgggcagtggggacaacacctgtaaagtgtgggacctc
cggcagcggcgctgcatctacaccatcccagcgcaccagaacctgatcagcgcagtcaag
ttccagcccacaaacggacactacctgctgaccggagcatacgacaacacggccaagata
tggacgcacccgctgtggtctcccctgaagacgctcgccggtcacgaggggaaagtgatg
gccgtggacatttcctccgatggagaactaatcgccacctgctcctacgacagaactttt
aagctttggatgacagaatga
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